| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,820,445 – 15,820,569 |
| Length | 124 |
| Max. P | 0.708900 |
| Location | 15,820,445 – 15,820,538 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 70.65 |
| Mean single sequence MFE | -20.63 |
| Consensus MFE | -4.23 |
| Energy contribution | -3.71 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15820445 93 - 20766785 CUUAUGUAAAAUGUAUAGAUGUAAAAACCAGAGCUUGAAGUGCGCUAUACAGGCGCUAGGUGUCGCUUAUAUUGCUUAUAUUUUGUG-------------UAAAAU .(((..(((((((((..(((((((..(((((.(((((.((....))...))))).)).))).....)))))))...)))))))))..-------------)))... ( -23.80) >DroSec_CAF1 9628 104 - 1 CAUAUGUAAAAUGUACA-AUGUAAAAA-CACAACUAGAAGUACGCUAUAAAGACGCUAGGUGUCGCCUAUAUUGCUUCUAUUUUGUGUAAAUUAAUUGUGUAAAAU .............((((-((......(-(((((.((((((((...((((..(((((...)))))...)))).))))))))..))))))......))))))...... ( -23.20) >DroSim_CAF1 13066 104 - 1 CAUAUGUAAAAUGUACA-AUGUAAAAA-CACAACUAGAAGUACGCUAUACAGACGCUAGGUGUCGCCUAUAUUGCUUAUAUUUUGUGUAAAAUAAUUGUGUAAAAU .............((((-((......(-(((((....(((((...((((..(((((...)))))...)))).))))).....))))))......))))))...... ( -17.90) >DroEre_CAF1 5409 91 - 1 CAUAUGUAAAUUG-ACACGUGUAAAAA-CUAAACAUGAAGUACUAUAUACAGGCGCCAGAUGUCGCU---GUUGCUUGUGUAU----------GAUUGUGUAAAAU ..((..(((....-...(((((.....-....)))))......((((((((((((.(((......))---).)))))))))))----------).)))..)).... ( -21.70) >DroYak_CAF1 12956 88 - 1 CAUAU---AAUUU-UCAUACGUAAAAAUCAAAACUUAUAGUACUGUAUGCAGGCGACAGGUGUCGUU---AGUAUUUGUAUUU-----------CUCGUGUAAAAU .....---.((((-(.(((((.................(((((...((((..(((((....))))).---.))))..))))).-----------..)))))))))) ( -16.55) >consensus CAUAUGUAAAAUGUACA_AUGUAAAAA_CAAAACUUGAAGUACGCUAUACAGGCGCUAGGUGUCGCUUAUAUUGCUUAUAUUUUGUG_______AUUGUGUAAAAU .....................................(((((.........((((.....))))........)))))............................. ( -4.23 = -3.71 + -0.52)
| Location | 15,820,461 – 15,820,569 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -24.12 |
| Consensus MFE | -10.08 |
| Energy contribution | -11.36 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15820461 108 + 20766785 AAGCAAUAUAAGCGACACCUAGCGCCUGUAUAGCGCACUUCAAGCUCUGGUUUUUACAUCUAUACAUUUUACAUAAGUUCAAUGUAGAAAAUAACAGUUGACUGUUAA ..((.(((((.(((........))).))))).))....(((((((....)))).........((((((..((....))..)))))))))..((((((....)))))). ( -20.40) >DroSec_CAF1 9657 106 + 1 AAGCAAUAUAGGCGACACCUAGCGUCUUUAUAGCGUACUUCUAGUUGUG-UUUUUACAU-UGUACAUUUUACAUAUGUUCAAUGUAGAAAAUAACAGUUGACUGUUAA ..((.(((.(((((........))))).))).))...............-(((((((((-((.((((.......)))).))))))))))).((((((....)))))). ( -27.90) >DroSim_CAF1 13095 106 + 1 AAGCAAUAUAGGCGACACCUAGCGUCUGUAUAGCGUACUUCUAGUUGUG-UUUUUACAU-UGUACAUUUUACAUAUGUUCAAUGUAGAAAAUAACAGUUGACUGUUAA ..((.(((((((((........))))))))).))...............-(((((((((-((.((((.......)))).))))))))))).((((((....)))))). ( -31.80) >DroEre_CAF1 5428 103 + 1 AAGCAAC---AGCGACAUCUGGCGCCUGUAUAUAGUACUUCAUGUUUAG-UUUUUACACGUGU-CAAUUUACAUAUGUAUAAUGUAGAAAAUAACAGUUCUCUGUUAA ..((...---.))......((((((.((((......(((........))-)...)))).))))-)).(((((((.......)))))))...((((((....)))))). ( -20.60) >DroYak_CAF1 12974 101 + 1 AAAUACU---AACGACACCUGUCGCCUGCAUACAGUACUAUAAGUUUUGAUUUUUACGUAUGA-AAAUU---AUAUGUUAAAUGUAGAAAAUAACAGUUGACUGUUAA .......---..((((....)))).((((((.(((.((.....)).)))......((((((((-...))---))))))...))))))....((((((....)))))). ( -19.90) >consensus AAGCAAUAUAAGCGACACCUAGCGCCUGUAUAGCGUACUUCAAGUUGUG_UUUUUACAU_UGUACAUUUUACAUAUGUUCAAUGUAGAAAAUAACAGUUGACUGUUAA ...........(((........))).........................(((((((((....((((.......))))...))))))))).((((((....)))))). (-10.08 = -11.36 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:58 2006