| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,806,758 – 15,806,859 |
| Length | 101 |
| Max. P | 0.793629 |
| Location | 15,806,758 – 15,806,859 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.44 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.793629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15806758 101 - 20766785 ----CGCGUU---------AGCUGC--UGCUCAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACACAGCCAACA---- ----...(((---------.((((.--((................(((((((...(((....))).))))))).................(((((....))))).)))))).))).---- ( -21.50) >DroVir_CAF1 4780 115 - 1 CGACUGCGGCAGCAACAGCGAAUGC--UGCACAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACAC--CAAACACAA- .((((((((((((....))...)))--)))...............(((((((...(((....))).)))))))........)))).....(((((....)))))....--.........- ( -27.40) >DroGri_CAF1 5437 102 - 1 --------------ACAGCGAAUGCACUGCUCAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACAC--CA-AUCUUA- --------------..((((.......))))..............(((((((...(((....))).))))))).................(((((....)))))....--..-......- ( -14.50) >DroYak_CAF1 4162 101 - 1 ----AGCGUC---------GCAUGC--UGCUCAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACACAGCCAACA---- ----......---------....((--((................(((((((...(((....))).))))))).................(((((....)))))...)))).....---- ( -17.80) >DroMoj_CAF1 5988 116 - 1 CGACAGCGCCAACGACAGCGAAUGC--AGCACAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACCA--CCAACCCAAC .(((.((((...((....))...))--.))...............(((((((...(((....))).))))))).........))).....(((((....)))))....--.......... ( -20.40) >DroAna_CAF1 4725 107 - 1 ----AGCGUUAGCGUU---AGCGGG--CGCUCAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACUCAGCCACCA---- ----(((((..((...---.))..)--))))..................((((....((.((((...)))).))................(((((....))))).....))))...---- ( -24.40) >consensus ____AGCGUC____AC___GAAUGC__UGCUCAUUUCAAAUAUAAAUACUGGCCUACGAAAUUGUUUCAGUAUCACAAUCAAGUCAACCAUCUUCGCAAGAAGAACAC__CCAACA____ .............................................(((((((...(((....))).))))))).................(((((....)))))................ (-13.10 = -13.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:56 2006