Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,802,300 – 15,802,414 |
Length | 114 |
Max. P | 0.903186 |
Location | 15,802,300 – 15,802,414 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 95.91 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -32.59 |
Energy contribution | -32.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.41 |
Structure conservation index | 0.91 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15802300 114 + 20766785 CUUUUUUAUUUUUGUCGGCUGGAUACGUGACUAUGUAGUCCGAAGAUGGAACAGAUGCAGUCCAAUUGGUGUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU ..........((((((((((((((((((.(((.(((.(((.((.((((((.(.......)))).)))....)).)))..))).)))))))))))))).)))))))......... ( -35.50) >DroSim_CAF1 8297 114 + 1 CUUUUUUAUUUUUGUCGGCUGGAUACGUGACUAUGUAGUCCGAAGAUGGAACAGAUGCAGUCCAAUUGGUAUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU ..........((((((((((((((((((.(((.(((.(((.((.((((((.(.......)))).)))....)).)))..))).)))))))))))))).)))))))......... ( -34.40) >DroYak_CAF1 8196 114 + 1 CUUUUUUGGUUUUGUCGGUUGGAUACGUGACAAUGUUGUCUGAAGAUGGAACAGAUGCAGUCCAAUUGGUGUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU ..........((((((((((((((((((.((..((((((((((.((((((.(.......)))).)))....)))))).))))..))))))))))))).)))))))......... ( -37.20) >consensus CUUUUUUAUUUUUGUCGGCUGGAUACGUGACUAUGUAGUCCGAAGAUGGAACAGAUGCAGUCCAAUUGGUGUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU ..........((((((((((((((((((.((..(((.(((.((.((((((.(.......)))).)))....)).)))..)))..))))))))))))).)))))))......... (-32.59 = -32.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:52 2006