Locus 4814

Sequence ID 2R_DroMel_CAF1
Location 15,801,541 – 15,801,634
Length 93
Max. P 0.746065
window7731

overview

Window 1

Location 15,801,541 – 15,801,634
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 83.94
Mean single sequence MFE -35.88
Consensus MFE -28.91
Energy contribution -28.50
Covariance contribution -0.41
Combinations/Pair 1.30
Mean z-score -1.94
Structure conservation index 0.81
SVM decision value 0.46
SVM RNA-class probability 0.746065
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15801541 93 - 20766785
CCCAGUGGCCACGGAGUCCGCCGGAACCACAAAAACCAUGUGGCCCAACAGCAACCUAAACGCCGUGCUGCUCAUCCUGGCAGUGCUGGCGUG
....(.((((((((......))((...........))..))))))).............((((((..(((((......)))))..).))))). ( -33.40)
>DroSec_CAF1 7516 93 - 1
CCCAGUGGCCACGGAGCCCUCCGGAACCACCAAAACCAUGUGGCCCAACAGCCACCUAAACGCCGUGCUGCUCAUUCUGGCAGUGCUGGCGUG
....((((...((((....))))...)))).........(((((......)))))....((((((..(((((......)))))..).))))). ( -38.40)
>DroSim_CAF1 7508 93 - 1
CCCAGUGGCCACGGAGCCCUCCGGAACCACCAAAACCAUGUGGCCCAACAGCCACCUAAACGCCGUGCUGCUCACUCUGGCAGUGCUGGCGUG
....((((...((((....))))...)))).........(((((......)))))....((((((..(((((......)))))..).))))). ( -38.40)
>DroEre_CAF1 7407 93 - 1
GCCAGUGGCCACGGAGCCCGCCGGAACCACCAAAACCAUGUGGCCCAACUGCCACCUAAACGCCGUGCUGCUCGUCCUGGCAGUGCUGGCGUG
(.((((((((((((......))((.....))........))))))..)))).)......((((((..(((((......)))))..).))))). ( -37.40)
>DroYak_CAF1 7399 93 - 1
GCCAGUGGCCACGGAGCCUGUCGGAACCACCAAAACCAUGUGGCCCCACUGCCACCUAAACGCCGUGCUGCUCAUCCUGGCAGUGCUGGCGUU
(.((((((((((((..((....))..))...........))))))..)))).).....(((((((..(((((......)))))..).)))))) ( -35.80)
>DroAna_CAF1 7546 92 - 1
GUCAGUGGUCGAGGAGUUCGCAGGAAACUAUAAAA-CAUGUGGCCCAGCUGCAGCUUCCGUGCUACGCUGCUCGCCCUGGCUGCUCUAGCAUC
(((((.((.((((.(((....((....))......-...((((((.(((....)))...).)))))))).)))))))))))(((....))).. ( -31.90)
>consensus
CCCAGUGGCCACGGAGCCCGCCGGAACCACCAAAACCAUGUGGCCCAACAGCCACCUAAACGCCGUGCUGCUCAUCCUGGCAGUGCUGGCGUG
....(.((((((((......))(....)...........))))))).............(((((((((((((......)))))))).))))). (-28.91 = -28.50 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:51 2006