Locus 4811

Sequence ID 2R_DroMel_CAF1
Location 15,786,408 – 15,786,517
Length 109
Max. P 0.583609
window7727

overview

Window 7

Location 15,786,408 – 15,786,517
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.33
Mean single sequence MFE -27.28
Consensus MFE -11.43
Energy contribution -12.19
Covariance contribution 0.76
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.42
SVM decision value 0.10
SVM RNA-class probability 0.583609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15786408 109 + 20766785
GAUUUCUGAAAAACACCCAUGA-----------GCCAACCGAAGUAAUUAUUUCAAUCCAAGCUGCAGCUGGGGAUUGCAAGUAUCAUGUUUCCGCAGCAAAUAAAAAAAAAGGCAAUCA
......................-----------(((....(((((....))))).............((((.(((..(((.......))).))).)))).............)))..... ( -21.30)
>DroSec_CAF1 9563 114 + 1
GAUUUCUGAA-AACACUCAUGA----GCUGUGAGCUAACCG-AGUAAUUAUUUCAAUCCAAGCUGCAGCUGGGGAUUGCAAGUAUCAUGUUUCCCCAGCAGUAGCAAAAAAAUGCAAUCA
((((.(((((-(..((((...(----((.....)))....)-))).....)))))......(((((.((((((((..(((.......))).)))))))).)))))........).)))). ( -35.20)
>DroSim_CAF1 9625 119 + 1
GAUUUCUGAA-AACACACAUGAGCGAGCCGUAAGCCAACCGAAGUAAUUAUUUCCAUCCAAGCUGCAGCUGGGGAUUGCAAGUAUCAAGUUUCCCCAGCAGCAGCAAAAAAAGGCAAUCA
((((......-...........(((...)))..(((....(((((....))))).......(((((.((((((((..((.........)).)))))))).))))).......))))))). ( -34.90)
>DroEre_CAF1 9665 102 + 1
GAUUUCUGAG-AACACAUAUGUAU-------GAGCCACCCAAAGUAAUUAUUAAAAUCCCAGCUGCAGCUG--GAUUACAGGUCUCAUGUUUCCGCAGCA--------AAAAAGCAAUCA
((((...(..-(((((....))((-------(((((.....((....)).........(((((....))))--)......)).))))))))..)...((.--------.....)))))). ( -19.70)
>DroYak_CAF1 9729 106 + 1
GAUUUCUGAA-AACACAUAUGCAU---GCGUGAGCCACCCAAAGUAGUUAUUGAAAUCCAAGCUGCAGCUG--GAUUACAGGUCUCAUGUUUCCGCAGCG--------AAAAGGCAAUCA
((((......-........(((..---(((((((((((.....))......((.((((((.((....))))--)))).)))).)))))))....)))((.--------.....)))))). ( -25.30)
>consensus
GAUUUCUGAA_AACACACAUGA_______GUGAGCCAACCGAAGUAAUUAUUUCAAUCCAAGCUGCAGCUGGGGAUUGCAAGUAUCAUGUUUCCGCAGCA_____AAAAAAAGGCAAUCA
.................................(((.......(((.................))).((((.(((..(((.......))).))).)))).............)))..... (-11.43 = -12.19 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:47 2006