Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,785,468 – 15,785,588 |
Length | 120 |
Max. P | 0.591322 |
Location | 15,785,468 – 15,785,588 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.67 |
Mean single sequence MFE | -35.61 |
Consensus MFE | -23.30 |
Energy contribution | -23.94 |
Covariance contribution | 0.65 |
Combinations/Pair | 1.31 |
Mean z-score | -1.37 |
Structure conservation index | 0.65 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15785468 120 + 20766785 GAGAAGUACUCCUACCGUGGCAUGAUCACCUUCUGCAUUCCCAGAGGGCAGAUUAAGUGGUCCGCGAUCUUCGAGUACAUGGAGAACUUGAAGGAUGAGAUGCAGAUAUUGUACUACUCG (((.(((((......((((((.(((((.(((((((......)))))))..)))))....).))))).(((((((((.(.....).)))))))))................))))).))). ( -38.10) >DroGri_CAF1 9678 120 + 1 GAGAAGAACACGUCUCAUGGCUUGGUCACCAUAGCAAUAGCCGACUUCGAACUGAAGUGGUCCACAAUAUUUAAAUAUAUGGAAGAUAAUCGCGACGCCCUCCAAAUAGAGCACUACUCG (((.((....((((.....((((((...))).)))....(((.(((((.....))))).)((((..((((....)))).))))........))))))..(((......)))..)).))). ( -23.50) >DroSec_CAF1 8636 120 + 1 GAGAAGUACUCCUACCGCGGCAUGAUCACCUUCUGCAUUCCCAAGGGGCAGAUCAAGUGGUCCGCGAUCUUCGACUACAUGGAGAACUUGAAGGAUGAGCUGCAGAUACUGUACUACUCG (((.(((((.......(((((....(((((((((((...((....)))))))((((((..((((((.....))......))))..))))))))).)))))))).......))))).))). ( -38.64) >DroSim_CAF1 8687 120 + 1 GAGAAGUACUCCUACCGCGGCAUGAUCACCUUCUGCAUUCCCAGGGGGCAGAUCAAGUGGUCCGCGAUCUUUGACUACAUGGAGAACUUGAAGGAUGAGCUGCAGAUACUCUACUACUCG (((.((((.((((..((((((.(((((.(((((((......)))))))..)))))....).))))).(((((........)))))......)))).(((.........))))))).))). ( -34.90) >DroEre_CAF1 8719 120 + 1 GAGAAGUACUCCUACCGAGGAAUGAUCACCUUCUGCAUUCCGAAAGGGCAGAUCAAGUGGUCCGAGAUCUUCGCCUACAUGGAGAACUUAAAGGAGCAAAUGCAGAUAUUGUACUACUCG (((.(((((((((..((((((..((((((..(((((...((....)))))))....)))))).....))))))((.....)).........))))((....)).......))))).))). ( -38.60) >DroYak_CAF1 8773 120 + 1 GAUAAGUACUCCUACCGAGGAAUGAUCACCUUCUGCAUUCCGAAGGGGCAGAUCAAGUGGUCUGCGAUCUUCAACUACAUGGAGAACCUAAAGGAGCAAAUGCAGAUACUGUACUACUCG ((..(((((((((....))))..........((((((((((...((((((((((....)))))))..((((((......)))))).)))...)))....)))))))....)))))..)). ( -39.90) >consensus GAGAAGUACUCCUACCGAGGCAUGAUCACCUUCUGCAUUCCCAAGGGGCAGAUCAAGUGGUCCGCGAUCUUCGACUACAUGGAGAACUUGAAGGAUGAGAUGCAGAUACUGUACUACUCG (((.(((((((((..(((((....(((((..(((((...((....)))))))....)))))))))).((((((......))))))......))))...............))))).))). (-23.30 = -23.94 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:46 2006