Locus 481

Sequence ID 2R_DroMel_CAF1
Location 2,691,570 – 2,691,680
Length 110
Max. P 0.528176
window911

overview

Window 1

Location 2,691,570 – 2,691,680
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.24
Mean single sequence MFE -50.18
Consensus MFE -37.82
Energy contribution -38.47
Covariance contribution 0.64
Combinations/Pair 1.21
Mean z-score -2.23
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.528176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2691570 110 + 20766785
----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUUUGCGGCCGCCAGGAGUCCUUACUGCUCCGCCUUUACGGACGUUGCACUCCGCCAGCUGACUACAU
----------.((((((((((((.((((..(((((.((((..(((((((.....))))))))))).)))))..)))).)))))))).....(((........)))))))........... ( -49.10)
>DroSec_CAF1 6355 110 + 1
----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUUUGCGGCCGCCAGGAGUCGCUACUGCUCCGCCUUUACGGACGUUGCACUCCACCAGCUGACUACAU
----------..(((((((((((.(((((.(((((.((((..(((((((.....))))))))))).))))).))))).((..((((.....)).))..)))))))))).)))........ ( -52.90)
>DroSim_CAF1 3747 110 + 1
----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUCUGCGGCCGACAGGAGUCGCUACUACUCCGCCUUUACGGACGUUGCACUCCGCCAGCUGACUACAU
----------.((((((((((((.(((((.(((((..((.(.((((((.......))))))).)).))))).))))).)))))))).....(((........)))))))........... ( -51.30)
>DroEre_CAF1 4127 110 + 1
----------AUGGCAGUGGAGUUGUGGCUGCUGCAGGUGGAGCCGCGCAUCUUUUGCGGCCGCCAGGAGUCCCUGCUGCUCCGCUUGUACGGACGUUGCACUCCGCCAGCGGACUACAU
----------..(((((.(((.((.((((.((((((((.(((((...)).))))))))))).)))).)).))))))))..((((((....((((........))))..))))))...... ( -49.20)
>DroYak_CAF1 3832 110 + 1
----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGCAUCUUUUGCGGUCGCCAGGAGUCCUUGCUGCUCCGCCUUUACGGACGCUGUACUCCGCCAGCGGACUACAU
----------...((((((((((.(((.(((....(((((((((.(((((.....)))((.(.......).))..)).)))))))))...))).)))...)))))))).))......... ( -47.90)
>DroAna_CAF1 14808 120 + 1
AAAGGUUGCCAUGGCCGUGGAGCUGUGGCUGCUGCUCGUGGAGCCCCGAAUCUUCUGCAGCCGGCAGGAGUCGCUGCUACUGCGUUUCCAUGGCCGCUGCACGCCUCCAGCGGACUACAU
...((((((..((((((((((((.(((((.((.((((...))))...((..(((((((.....))))))))))).))))).))...))))))))))..)).(((.....))))))).... ( -50.70)
>consensus
__________AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUUUGCGGCCGCCAGGAGUCCCUACUGCUCCGCCUUUACGGACGUUGCACUCCGCCAGCGGACUACAU
...........((((((((((((.((((..(((((.((((..((((((.......)))))))))).)))))..)))).)))))))).....(((........)))))))........... (-37.82 = -38.47 +   0.64) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006