Locus 4809

Sequence ID 2R_DroMel_CAF1
Location 15,785,134 – 15,785,249
Length 115
Max. P 0.500000
window7725

overview

Window 5

Location 15,785,134 – 15,785,249
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -25.35
Consensus MFE -15.96
Energy contribution -16.90
Covariance contribution 0.94
Combinations/Pair 1.33
Mean z-score -1.66
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15785134 115 - 20766785
UAAAUAAACCAUA-UUCACAUCCAAAGUGAGCAGCAAAUGUUUAUGUAGA----UAUCUGUGUGCGUGCACUAGUGUAUUGAAAAUUUCAAUCUGCUGUUGCAAGUGGUCAAUAUCGUCA
.......(((((.-.((((.......))))((((((.((((((....)))----))).))).))).((((.((((..(((((.....)))))..)))).)))).)))))........... ( -25.90)
>DroSim_CAF1 8349 120 - 1
UAAAUAAACCACAGCUCGUAUCCAAAGUGAGCAGCAAAUGUUUAUGUAGAUAAAUAUCUUUGAGUGUGCACCAGUGUAUUGAAAAUUUCAAUCUGCUGUUGCAAGUGCUCAAUAUCGUUA
.............(((((.........)))))(((..((((((((....))))))))..((((((.((((.((((..(((((.....)))))..)))).))))...))))))....))). ( -28.70)
>DroEre_CAF1 8398 112 - 1
UAAAUAAACCGCAGUUCAUUUCCAAAGUGAGCAACAAAUGUUUAUGUAGA----UAAAUUUAUG--UGCA--CGUGUAUUGAAAAUUUCAAUCUGCUGCUGCGAGUGGUCAAUAUUGUUA
.......(((((.(((((((.....)))))))......(((....(((((----(((((((..(--(((.--...))))...))))))..))))))....))).)))))........... ( -23.80)
>DroYak_CAF1 8444 113 - 1
UAUAUAAACCGCAGUUC-UUUCCAAUCUAAACAAUAAACAUUCAUGUAGA----UAUCUUUAUGACUGCACCCGUGAAUUGAAAAUUUCAAUCUGCUGGUGCAACUGGUCAAUA--GUUA
...........(((((.-.......................(((((.((.----...)).)))))..(((((.((..(((((.....)))))..)).)))))))))).......--.... ( -23.00)
>consensus
UAAAUAAACCACAGUUCAUAUCCAAAGUGAGCAACAAAUGUUUAUGUAGA____UAUCUUUAUG_GUGCACCAGUGUAUUGAAAAUUUCAAUCUGCUGUUGCAAGUGGUCAAUAUCGUUA
.......(((((.((((((.......))))))..................................((((.((((..(((((.....)))))..)))).)))).)))))........... (-15.96 = -16.90 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:45 2006