Locus 4807

Sequence ID 2R_DroMel_CAF1
Location 15,781,667 – 15,781,787
Length 120
Max. P 0.952064
window7723

overview

Window 3

Location 15,781,667 – 15,781,787
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.22
Mean single sequence MFE -43.10
Consensus MFE -23.34
Energy contribution -25.48
Covariance contribution 2.15
Combinations/Pair 1.35
Mean z-score -2.07
Structure conservation index 0.54
SVM decision value 1.42
SVM RNA-class probability 0.952064
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15781667 120 + 20766785
CAAGUAUCUGGAGAUCGGCCGCUUGCAGGACUUUGCCAAUACCAAGGUGAAGAAUCUGCCGAGCGGUAUUAAGCGUAUGCUCAUGCUGUGCUGCAAUCUGUGCGGAAACUCCAAGGUACU
..(((((((((((....((((((((((((.(((..((........))..)))..)))).))))))))....(((((......)))))...(((((.....)))))...)))).))))))) ( -47.00)
>DroSim_CAF1 4917 120 + 1
CAAGUAUCUGGAGAUUGGCCGCUUGCAGGACUUUGCCAACACCAAGGUGAAGAAUCUGCCGAGCGGUAUUAAGCGUAUGCUCAUGCUGUGCUGCAAUCUGUGCGGAAACUCCAAGGUACU
..(((((((((((....((((((((((((.(((..((........))..)))..)))).))))))))....(((((......)))))...(((((.....)))))...)))).))))))) ( -47.00)
>DroEre_CAF1 4944 120 + 1
CAAGUAUCUGGAGAUCGGUCACUUGCAGGACUUUGCCAACACUAAGGUGAAGGAUCUGCCUAGCGGUAUCAAGCGAAUGCUCAUGCUGUGCUGCACUCUGUGCGGAAACUCCAAGGUACU
..(((((((((((.((.(.(((..(((((.(((..((........))..)))..)))))...(((((((..((((........))))))))))).....)))).))..)))).))))))) ( -42.80)
>DroYak_CAF1 4953 120 + 1
CAAGUAUCUGGGGAUUGGCCACCUGCAGGACUUUGCCAGCACCAAGGUGAAGGAUCUGCCCAGCGGCAUCAAGCGAAUGCUCAUGCUGUGCUGCAAUCUGUGCGGCAACUCCAAGGUACU
..(((((((((((.(((.((((..(((((.(((..((........))..)))..)))))...(((((((..((((........))))))))))).....))).).))))))).))))))) ( -46.30)
>DroMoj_CAF1 5333 120 + 1
AAAGUACCUGGCCAUCAUGAAUCUGUUGGAUAAGUCGACCAUAAGAGUUGAAUAUCUCACCACUGGCAUGAAGCGCAAGCUCUCCGUGUGCUGCGCUCUGUGCGGCAAUACCAAGGUGAG
....(((((.(((...........((.(((((..((((((....).))))).))))).)).....((((..((((((.((.(.....).))))))))..))))))).......))))).. ( -36.80)
>DroAna_CAF1 4925 120 + 1
AAGAUAUCUGCAAGUUUGCCACCUGGAGGAAUAUGCCAGUCACACGGUGCAGGAACUGUCAUCUGGCAUGAAGCGGAUGCUCUCCGUUUGCUGUGCCCUCUGCGGACAUACGAAGGUUCG
..((.((((....((.((((.(..(((((..((((((((....(((((......)))))...))))))))(((((((.....))))))).......)))))).)).)).))..)))))). ( -38.70)
>consensus
CAAGUAUCUGGAGAUCGGCCACCUGCAGGACUUUGCCAACACCAAGGUGAAGGAUCUGCCCAGCGGCAUCAAGCGAAUGCUCAUGCUGUGCUGCAAUCUGUGCGGAAACUCCAAGGUACU
...((((((((((....(((((..((((..(((((((........)))))))...))))...)))))....(((....))).........(((((.....)))))...)))).)))))). (-23.34 = -25.48 +   2.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:43 2006