| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,777,450 – 15,777,558 |
| Length | 108 |
| Max. P | 0.794214 |
| Location | 15,777,450 – 15,777,558 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.56 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -19.36 |
| Energy contribution | -19.95 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15777450 108 - 20766785 CACCAUCCUGAAGAAGAUCUUGGAUGCCAUCAAGGAUCUGCUCAAUGAGGCAACCUUCGAUUGCAGCGACUCCGGCAUUCAGGUAAAAA-UU----GCA-CAAA--A--AAGAUUUUA .............(((((((((((((((.....(((..((((((((((((....)))).)))).))))..))))))))))..(((....-.)----)).-....--.--)))))))). ( -27.60) >DroGri_CAF1 727 107 - 1 AACUAUACUUAAGAAAAUCCUGGAUGCCAUCAAGGAUUUGCUAAAUGAAGGCACAUUCGAUUGCAGCGAUUCUGGCAUUCAGGUAAGUA-AU----CCA-G-AUGAU--UAG--CUGA .....((((((.......(((((((((((.....((.(((((.((((((......))).)))..))))).)))))))))))))))))))-..----.((-(-.....--...--))). ( -29.01) >DroSec_CAF1 709 108 - 1 CACCAUCCUGAAGAAGAUCUUGGAUGCCAUCAAAGAUCUGCUAAAUGAGGCAACCUUCGAUUGCAGCGACUCCGGCAUUCAGGUACAAA-CU----GCA-CCAA--A--AAGAUCUUA .............(((((((((((((((.........((((.((.(((((....))))).)))))).......))))))).(((.(...-..----).)-))..--.--)))))))). ( -27.99) >DroEre_CAF1 714 108 - 1 AACCAUCUUGAAGAAGAUCUUAGAUGCCAUCAAGGAUCUGCUCAAUGAGGCGACCUUUGAUUGCAGCGACUCCGGGAUUCAGGUACAAA-CU----GGA-AAAG--G--AAGGGCUUA ..((.((((........(((..(((((.(((((((.((.(((......))))).))))))).))).....))..)))(((((.......-))----)))-..))--)--).))..... ( -26.10) >DroWil_CAF1 3393 114 - 1 UACCAUUCUGAAGAAGAUUUUGGAUGCCAUCAAGGAUUUGCUCACUGAGGGUACCUUUGAUUGCAGCGAUUCCGGCAUUCAGGUAAUUUAA-AUCUUCA-ACUA--UUCCCGAUCUUA ............((((((((((((((((.....(((.(((((((..((((....))))...)).))))).)))))))))))........))-)))))).-....--............ ( -28.70) >DroYak_CAF1 710 109 - 1 AACCAUCCUAAAGAAGAUCUUGGAUGCCAUCAAGGAUCUGCUCAAUGAGGCAACCUUCGAUUGCAGCGACUCCGGAAUUCAGGUACAAA-CU----GCACAAAA--G--AAGCUCGCA ....((((..(((.....)))))))((.(((((((...((((......)))).)))).))).)).((((((.(......(((.......-))----).......--)--.)).)))). ( -22.62) >consensus AACCAUCCUGAAGAAGAUCUUGGAUGCCAUCAAGGAUCUGCUCAAUGAGGCAACCUUCGAUUGCAGCGACUCCGGCAUUCAGGUAAAAA_CU____GCA_AAAA__A__AAGAUCUUA ..................((((((((((.....(((..((((((((((((....)))).)))).))))..)))))))))))))................................... (-19.36 = -19.95 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:41 2006