Locus 4802

Sequence ID 2R_DroMel_CAF1
Location 15,772,246 – 15,772,337
Length 91
Max. P 0.957443
window7714

overview

Window 4

Location 15,772,246 – 15,772,337
Length 91
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 66.29
Mean single sequence MFE -22.14
Consensus MFE -12.36
Energy contribution -11.88
Covariance contribution -0.48
Combinations/Pair 1.47
Mean z-score -1.90
Structure conservation index 0.56
SVM decision value 1.48
SVM RNA-class probability 0.957443
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15772246 91 + 20766785
AAGCAGUGUGACCAGUGCUCGCCGAUUAA-AAAAUACUGGCGCCAUAAAUGGUAAUAGGCCAUGUACACUGUAAUUAGAAAUUACAUUCAUA-------------------------
..((((((((....(((..(((((.....-.......))))).)))..(((((.....))))).)))))))).....(((......)))...------------------------- ( -21.30)
>DroSec_CAF1 2330 91 + 1
AAGCAGUGUGACCAGUGCACUACGAUUAA-AAAACACCUGCGCAAUAAAUGGUAAUAGGCCAUGUACACUGCAAUUAGAAAUUACUUACUUA-------------------------
..((((((((....(((((..........-........))))).....(((((.....))))).))))))))....................------------------------- ( -21.77)
>DroSim_CAF1 2318 91 + 1
AAGCAGUGUGACCAGUGCUCUACGAUUAA-AAAACACCUGCGAAAUAAAUGGUAAUAGGGAAUGUACACUGCAAUUAGAAAUUACUUACUUA-------------------------
..((((((((..((...(((((..((((.-...................))))..)))))..))))))))))....................------------------------- ( -16.45)
>DroEre_CAF1 2558 115 + 1
ACGCAGUGGGACCAGGGCACGGCGGCAAAAAAAAUACCUGCAGAAUAAUUGGUAAUAGGCUGAGUCCACUGCAACCAGCAAUUAAAGUCAUAAUCCUGAGGCAUUAUCCUGU--AUA
..((((((((..(((.((......))........((((............)))).....)))..))))))))...(((....(((.(((..........))).)))..))).--... ( -25.20)
>DroYak_CAF1 9796 103 + 1
ACGCAGUGUGACCAGCGUUCGGCGCCAAA-AAAAUAC-------AUAAUUGGUAAUAGGCUGGAUCCACUGCAAAAAGCAAUAAAAGUUUAA------AAACAUUAUCCUUUAUAUA
..((((((.(((((((.(.....(((((.-.......-------....)))))...).))))).))))))))...........((((..(((------.....)))..))))..... ( -26.00)
>consensus
AAGCAGUGUGACCAGUGCUCGACGAUUAA_AAAAUACCUGCGCAAUAAAUGGUAAUAGGCCAUGUACACUGCAAUUAGAAAUUACAUUCUUA_________________________
..((((((((....((.....)).........................(((((.....))))).))))))))............................................. (-12.36 = -11.88 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:35 2006