| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,769,007 – 15,769,103 |
| Length | 96 |
| Max. P | 0.720162 |
| Location | 15,769,007 – 15,769,103 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.41 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -19.35 |
| Energy contribution | -19.85 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15769007 96 - 20766785 UUUAGCACAAUUUUGUGAGAUUUGUUGUUAACAAAUUUCUCGGCACAUUUUCGUUGCGCCAAUCGCAUGCGAUUU-UUGGCACGCUAUCAGAAAGCG ....((.(((....(.(((((((((.....))))))))).)(((.((.......)).)))(((((....))))).-))))).((((.......)))) ( -24.20) >DroSec_CAF1 17292 82 - 1 UUUAGCACAAUUUUGUGAGAUUUGUUGUUAACAAAUUUCGCGGCAC--------------AAUCGCAUGCGAUUU-UUGGCACGCUAUCAGAAAGCG ..((((.......((((((((((((.....))))))))))))((..--------------(((((....))))).-...))..)))).......... ( -22.60) >DroSim_CAF1 18289 82 - 1 UUUAGCACAAUUUUGUGAGAUUUGUUGUUAACAAAUUUCGCGGCAC--------------AAUCGCAUGCGAUUU-UUGGCACGCUAUCAGAAAGCG ..((((.......((((((((((((.....))))))))))))((..--------------(((((....))))).-...))..)))).......... ( -22.60) >DroEre_CAF1 18013 95 - 1 UUUAGCACAAUUUUGUGAGAUUUUUUGUUAACAAAUUUCGCGGCAC--UUUUGUUGCGCAAAUCGCAUGCGAUUUUUUGGCACGCUAUCAGAAAGCG ..((((.......(((((((...((((....))))..))((((((.--...)))))).....)))))(((.(.....).))).)))).......... ( -20.20) >consensus UUUAGCACAAUUUUGUGAGAUUUGUUGUUAACAAAUUUCGCGGCAC______________AAUCGCAUGCGAUUU_UUGGCACGCUAUCAGAAAGCG ....((.(((..(((((((((((((.....))))))))))))).................(((((....)))))..))))).((((.......)))) (-19.35 = -19.85 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:34 2006