Locus 480

Sequence ID 2R_DroMel_CAF1
Location 2,688,597 – 2,688,707
Length 110
Max. P 0.573581
window910

overview

Window 0

Location 2,688,597 – 2,688,707
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -40.82
Consensus MFE -21.00
Energy contribution -20.79
Covariance contribution -0.22
Combinations/Pair 1.34
Mean z-score -2.07
Structure conservation index 0.51
SVM decision value 0.08
SVM RNA-class probability 0.573581
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2688597 110 + 20766785
AUCAUCAAAAUCGACGAAACUUCCUUGUCUA-AUAUCUCCGGGAACUCCACUCCGGAAGAGGAGGAG---------GAUUCGGAGUCCGAUCUGCUGUCCAUAGAGGGGGAGGUAAGCGA
..........(((.(...((((((((.((((-....(((((((..((((.(..(....)..).))))---------..)))))))...(((.....)))..)))).))))))))..)))) ( -38.40)
>DroSec_CAF1 2219 110 + 1
AUCAUCAAAAUCGACGAAACUUCCCUGUCUA-UUAUCUCCGGGAACUCCACUCCGGUAGAGGAGGAG---------GAUUCGGAGUCCGAUCUGCUGUCCAUAGAGGGGGAGGUGAGCGA
..........(((.(...((((((((.((((-(..((((((((........))))).)))(((.(.(---------(((.(((...)))))))..).)))))))).))))))))..)))) ( -41.20)
>DroSim_CAF1 773 110 + 1
AUCAUCAAAAUCGACGAAACUUCCCUGUCUA-UUAUCUCCGGGAACUCCACUCCGGUAGAGGAGGAG---------GAUUCGGAGUCCGAUCUGCUGUCCAUAGAGGGGGAGGUGAGCGA
..........(((.(...((((((((.((((-(..((((((((........))))).)))(((.(.(---------(((.(((...)))))))..).)))))))).))))))))..)))) ( -41.20)
>DroEre_CAF1 1078 110 + 1
AUCGUCAAGGUGGACGAAACUUCGUUGUCUG-CUAUCUCCGGGAACUCCACUCCGGAAGAGGAGGAG---------GAUUUGGAGCUCGAUCUGCUGUCCAUAGACGGGGAGGAGAGCGG
........((..(((((.......)))))..-))...((((((..((((.(..(....)..).))))---------..))))))((((..(((.(((((....))))))))...)))).. ( -40.40)
>DroYak_CAF1 773 110 + 1
AUCAUCAAAGUCGACGAAACUUCCUUGUCCA-AAAUCUCCGGGAACUCCACUCCGGAAGAGGAGGAG---------GAUUCGGAGUCGGAUCUGCUGUCCAUAGAGGGGGAGGAGAGCAA
.((.((......)).))...((((((.(((.-....(((((((..((((.(..(....)..).))))---------..)))))))..((((.....)))).....))).))))))..... ( -37.90)
>DroAna_CAF1 11527 119 + 1
AUCACCAAGCUCGGGGAGGUUCCC-AUUCUGCCCCUCUCCUGCGAUUCUACCGUGGAAGAGGAGGAGCUGGAAACAGAUCAUGAGCUCGAUCUAGGCUCUUUUGAGGGCGAGGAGAUCGA
........(((((((((((.....-..))).)))).(((((.(..((((.....))))..).)))))(((....))).....))))(((((((..(((((....)))))....))))))) ( -45.80)
>consensus
AUCAUCAAAAUCGACGAAACUUCCUUGUCUA_AUAUCUCCGGGAACUCCACUCCGGAAGAGGAGGAG_________GAUUCGGAGUCCGAUCUGCUGUCCAUAGAGGGGGAGGAGAGCGA
.((.((......)).))..(((((((.((((.....(((((((..((((.((.(....).)).))))...........)))))))...(((.....)))..)))).)))))))....... (-21.00 = -20.79 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:39 2006