Locus 48

Sequence ID 2R_DroMel_CAF1
Location 1,302,795 – 1,302,915
Length 120
Max. P 0.777384
window88

overview

Window 8

Location 1,302,795 – 1,302,915
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 71.43
Mean single sequence MFE -41.63
Consensus MFE -22.92
Energy contribution -25.68
Covariance contribution 2.75
Combinations/Pair 1.31
Mean z-score -1.76
Structure conservation index 0.55
SVM decision value 0.55
SVM RNA-class probability 0.777384
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1302795 120 + 20766785
ACAACAGGAAUUCGUGUUGCGCAACUGACGCGGCGCUUUCAUCAACUGGAGCCUAACCCGGCGAAAUGGCUAAUCCGUUUCGCUGGUGUCGAGUGUCGCACGACUGCGUGUUCCAGAUUA
......(((((.(((((((.((.(((((((((((.((..........)).))).....(((((((((((.....)))))))))))))))).)))...)).)))).))).)))))...... ( -46.70)
>DroSec_CAF1 21309 118 + 1
ACAACAGGAAUUCGUGUUGCGCACCUGGCGCGG--CUUUCAUCAACUGGAGCCUAACCCGGCGAAAUGGCUAAUCCGUUUCGCUGGUGUCGAGUGUCGCACGACUGCGUGUUCCAGAUUA
......(((((.((((((((((((.((((((((--((((........)))))).....(((((((((((.....))))))))))))))))).))).))))..)).))).)))))...... ( -49.40)
>DroEre_CAF1 4160 118 + 1
ACAACCGGAAUUCGUGCUGCUCAUCUAGCUCGG--CUUUCAUCAACUGGAGCCUAACCCGACGGAAUGGUUAAUCCGUUUCGCUGGUGUCGCAUGUCGCACGACUGCGUGUUGCAGAUUA
.((((((.(..(((((((((.((.(((((..((--((((........)))))).........(((((((.....))))))))))))))..)))....)))))).).)).))))....... ( -37.70)
>DroAna_CAF1 71710 94 + 1
CAAUCUGGGAAUCCAAUUUUUCACC--------------------------GCUCCCUCAGCAGGAUGGCAAAGCGGUGCCGCUGGUGCCGGGUGUCGCGCGACUGCGUCCUGCACAUUA
......((((...............--------------------------..))))...(((((((((((.((((....))))..))))..(((((....))).)))))))))...... ( -32.73)
>consensus
ACAACAGGAAUUCGUGUUGCGCACCUGGCGCGG__CUUUCAUCAACUGGAGCCUAACCCGGCGAAAUGGCUAAUCCGUUUCGCUGGUGUCGAGUGUCGCACGACUGCGUGUUCCAGAUUA
............((((((........)))))).............(((((((.....((((((((((((.....))))))))))))..........((((....)))).))))))).... (-22.92 = -25.68 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:42 2006