Locus 4799

Sequence ID 2R_DroMel_CAF1
Location 15,767,854 – 15,767,953
Length 99
Max. P 0.810213
window7711

overview

Window 1

Location 15,767,854 – 15,767,953
Length 99
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.09
Mean single sequence MFE -25.23
Consensus MFE -18.36
Energy contribution -18.30
Covariance contribution -0.06
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.73
SVM decision value 0.65
SVM RNA-class probability 0.810213
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15767854 99 - 20766785
UUCGAAACGUUCGCUUGGCGAACCUUUUUAGUUUU-------------GUGAAUAACAAAUAUUC-----ACACUCGUGAUUUUCUAUUAGCAUGUGCGUGCAA---UAUUCGCAAUUGU
...((((.((((((...)))))).)))).....((-------------(((((((........((-----((....))))..........((((....))))..---))))))))).... ( -23.70)
>DroSec_CAF1 16182 107 - 1
UUCGAAGCGUUCGCUCGGCGAACUUUCUUAGUUUU-------------GUGAAUAAAAAAUAUUCACUUCACACUCGUGAUUUUCUAUUAGCAUGUGCGUGCAAUAAUAUUCACAAUUGU
...((((.((((((...))))))))))......((-------------(((((((.............((((....)))).....((((.((((....)))))))).))))))))).... ( -26.00)
>DroSim_CAF1 17156 107 - 1
UUCGAAGCGUUCGCUUGGCGAACUUUCUUAGUUUU-------------GUGAAUAACAAAUAUUCACUUCACACUCGUGAUUUUCUAUUAGCAUGUGCGUGCAAUAAUAUUCACAAUUGU
...((((.((((((...))))))))))......((-------------(((((((.............((((....)))).....((((.((((....)))))))).))))))))).... ( -26.00)
>DroEre_CAF1 16924 111 - 1
UUCGAAGCGUUUGCUUGAUGGACUUACAUAGUUGUGCUUGGGGAAAAUGUGAAUAGCAGU-----AUUUCACACUCGUGAUUUU-UAUUAGCAUGUGCGUGCAA---UAUUCGCAAUUGU
(((.(((((...(((..(((......))))))..))))).)))....((((((((..(((-----(..((((....))))....-)))).((((....))))..---))))))))..... ( -25.20)
>consensus
UUCGAAGCGUUCGCUUGGCGAACUUUCUUAGUUUU_____________GUGAAUAACAAAUAUUCACUUCACACUCGUGAUUUUCUAUUAGCAUGUGCGUGCAA___UAUUCACAAUUGU
........((((((...)))))).........................(((((((.............((((....))))..........((((....)))).....)))))))...... (-18.36 = -18.30 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:32 2006