Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,767,095 – 15,767,191 |
Length | 96 |
Max. P | 0.519773 |
Location | 15,767,095 – 15,767,191 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 71.73 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -6.58 |
Energy contribution | -9.14 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.63 |
Structure conservation index | 0.24 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15767095 96 + 20766785 CGGCAAUUUAUGAUGGCCAUAAAG-AGGUGUUUUAUA---------------G-CACAUUGGCAUGGUCGUGAUAAGU--UAGUUGGCUAU-AUCAACUGGCGAACGACCAUCAUU .........(((((.((((.....-..(((((....)---------------)-)))..))))..((((((.....((--(((((((....-.)))))))))..))))))))))). ( -31.00) >DroSec_CAF1 15425 96 + 1 CGGAAAUUUAUG--GGCCAUAAAG-AGGUGUUUUAUA---------------G-CGCAUGGGCAUGGUCGUGAUAAGUUUUAGUUGGCUAU-AUCAACUGGCGAACGACCAUCAUU .......(((((--.((.((((((-.....)))))).---------------)-).)))))(.((((((((.....((..(((((((....-.)))))))))..)))))))))... ( -25.50) >DroSim_CAF1 16407 92 + 1 CGGAAAUUUAUG--GGCCAUAAAG-AG----UAUAUA---------------G-CGCAUGGACAUGGUCGUGAUAAGUUUUAGUUGGCUAU-AUCAACUGGCGAACGACCAUCAUU ......((((((--.((.(((...-..----..))).---------------)-).)))))).((((((((.....((..(((((((....-.)))))))))..)))))))).... ( -23.50) >DroEre_CAF1 16133 102 + 1 CGACAAUUUAUG--GCCCAUAAAG-AGGUGUUGUAUAGU-UGGGCGACUAUGG-CGCAUGGACAUGGUCGUGAUAAGU------UGACU---AUCAACUAGUGAACGACGAUCAUU ...(((((((..--((((......-.)).))..)).)))-)).(((((((((.-........)))))))))(((..((------(.(((---(.....)))).)))....)))... ( -28.50) >DroAna_CAF1 15016 109 + 1 CGACAAUUUAUU--GGCCAUAAAGUAGGUGUUAUAAAAUAUAGUCGAAUAUGGCCGGACGGACG-GAGCGAGAUAAGUUUUAG----CCAUCAUUGGCUAGUAAACAGCGGUCAUU .(((((((((((--(((((((..(...(((((....)))))...)...)))))))...((....-...)).))))))))((((----(((....))))))).........)))... ( -28.10) >consensus CGGCAAUUUAUG__GGCCAUAAAG_AGGUGUUAUAUA_______________G_CGCAUGGACAUGGUCGUGAUAAGUUUUAGUUGGCUAU_AUCAACUGGCGAACGACCAUCAUU ......((((((.....))))))........................................((((((((.....((..(((((((......)))))))))..)))))))).... ( -6.58 = -9.14 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:31 2006