Locus 4797

Sequence ID 2R_DroMel_CAF1
Location 15,763,829 – 15,763,947
Length 118
Max. P 0.758789
window7709

overview

Window 9

Location 15,763,829 – 15,763,947
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.04
Mean single sequence MFE -32.73
Consensus MFE -24.84
Energy contribution -24.84
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -1.42
Structure conservation index 0.76
SVM decision value 0.50
SVM RNA-class probability 0.758789
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15763829 118 - 20766785
CUU-AUUUACACAUUUGUUGCAACCUU-UGUAGAAGUGGCCACCAUACAAGGAGCUCGUCCUGUCGCUGCCCUUCUGGUCGCUCAUGAUGCUCCACUACGGCAGCAUGUGGGGUCUGUUC
...-.......(((((.(((((.....-))))))))))(((.(((((..((((.....))))...((((((.(..(((..((.......)).)))..).)))))).))))))))...... ( -33.70)
>DroSec_CAF1 12271 118 - 1
CUU-ACUUACACAUUUGUUGCUACCUU-UGUAGAAGUGGCCACCAUACAAGGAACUCAUCCUGUCGCUGCCCUUCUGGUCGCUCAUGAUGCUCCACUACGGCAGCAUGUGGGGUCUGUUC
...-((((..(((...((....))...-)))..))))((((.(((((..((((.....))))...((((((.(..(((..((.......)).)))..).)))))).)))))))))..... ( -34.90)
>DroSim_CAF1 13196 118 - 1
CUC-GCUUACACAUUUCUUGCUACCUU-UGUAGAAGUGGCCACCAUACAAGGAGCUCAUCCUGUCGCUGCCCUUCUGGUCGCUCAUGAUGCUCCACUACGGCAGCAUGUGGGGUCUGUUC
...-.......(((((((.((......-.)))))))))(((.(((((..((((.....))))...((((((.(..(((..((.......)).)))..).)))))).))))))))...... ( -36.50)
>DroEre_CAF1 12892 118 - 1
CUU-ACUUUUAUAUUUGAUGCAAACUU-UGUAGAAGUGGCCACCAUACAAGGAGCUCGUCCUGUCGCUGCCCUUCUGGUCGCUCGUGAUGCUCCACUACGGCAGUAUGUGGGGUCUGUUC
...-(((((((((..............-)))))))))((((.(((((..((((.....))))...((((((.(..(((..((.......)).)))..).)))))).)))))))))..... ( -34.24)
>DroWil_CAF1 27194 119 - 1
UUUUAAUUA-AAAUUCUUUAUGAUUUUCAACAGAAAUGGCCACCAUAUAAGGAGUUGAUAUUAUCCUUGCCCUUCUGGUCCUUGAUGCUUUUGCAUUAUGGCAGCAUGUGGGGUCUUUUC
.........-......................((((.((((.(((((((((((..........)))))((((....)).((.((((((....)))))).))..)))))))))))).)))) ( -28.70)
>DroAna_CAF1 11704 105 - 1
AUU-AUUU----AUUUA---------U-UACAGAAAUGGCCUCCAUACAAGGAACUGGUUCUUUCGCUGCCCUUCUGGUCCCUGUUAUUCCUCCACUACGGCAGCAUGUGGGGUCUGUUC
...-....----.....---------.-....(((..((((.(((((.((((((....)))))).((((((.(..(((..............)))..).)))))).)))))))))..))) ( -28.34)
>consensus
CUU_ACUUACACAUUUGUUGCAACCUU_UGUAGAAGUGGCCACCAUACAAGGAGCUCAUCCUGUCGCUGCCCUUCUGGUCGCUCAUGAUGCUCCACUACGGCAGCAUGUGGGGUCUGUUC
................................(((..((((.(((((..((((.....))))...((((((.(..(((..............)))..).)))))).)))))))))..))) (-24.84 = -24.84 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:30 2006