Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,761,204 – 15,761,324 |
Length | 120 |
Max. P | 0.939877 |
Location | 15,761,204 – 15,761,324 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -49.26 |
Consensus MFE | -45.08 |
Energy contribution | -45.68 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.05 |
Mean z-score | -1.48 |
Structure conservation index | 0.92 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15761204 120 + 20766785 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUACGGAUGGCAGCCGCACUUCUUGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGG ...(((((((((((..........)))))).((((((((.....)))))))))))))....(((.(((((.(((((((.(....(((.......))).).))))))))).))).)))... ( -48.70) >DroSec_CAF1 9679 120 + 1 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUACGGAUGGCAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGGAGACAGGCGGCCUGG ...(((((((((((..........)))))).((((((((.....)))))))))))))....(((.(((((.((.(..((((........))))..).))))..(....).))).)))... ( -47.70) >DroSim_CAF1 10557 120 + 1 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACAAUGGGCAGCAGAUACGGAUGGGAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGA .((((((((((((((.(((.(((((.....(((((((((.....)))))))))........)))))..)))..)))))))))).((((((.(((.(....).))).)).)))).)))).. ( -54.12) >DroEre_CAF1 10254 120 + 1 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAAAUAUGGAUGACAGCCGCACUUCUGGACGAUGGCCGCCGUCUGGCAGGCGAGGAGGCAAGCGGCCUGG .....((((((((((.(((...........(((((((((.....)))))))))....((.......)))))..))))))))))(((((((..((.(....).))..)))....))))... ( -46.90) >DroYak_CAF1 10393 120 + 1 AAGGUGUCGUUGAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUAUGGAUGGCAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGC .((((((((((.(((.(((..(((......(((((((((.....)))))))))....))).((...)))))..))).)))))).((((((.(((.(....).))).)).)))).)))).. ( -48.90) >consensus AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUACGGAUGGCAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGG .((((((((((((((.(((...........(((((((((.....)))))))))....((.......)))))..)))))))))).((((((.(((.(....).))).)).)))).)))).. (-45.08 = -45.68 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:21 2006