Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,757,741 – 15,757,855 |
Length | 114 |
Max. P | 0.571230 |
Location | 15,757,741 – 15,757,855 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -34.85 |
Consensus MFE | -24.94 |
Energy contribution | -24.25 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.34 |
Mean z-score | -1.12 |
Structure conservation index | 0.72 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15757741 114 + 20766785 ------UUAAUGGUAUUCUACAGUUUUGACUCUGUGAGCCAGUUGAAGGACUGCGGCUUGCGAUCGGAUGACGGGCUGAUGGCCACAUUAAUGAUGGUUGGCCUGUCGGUGAGCUGAUUG ------......(((..(..(((((((....(((.....)))....)))))))..)..)))((((((.(((((((((...(((((((....)).)))))))))))))).....)))))). ( -37.20) >DroVir_CAF1 8360 115 + 1 -----GUGUUUGUUGUUUUACAGUUUGGACUCUGUGAGCCAAUUGAACGAUUGUGGCUUUCGAUCUGAAGAGGGGCUGAUUGCCACAUUUAUAAUGGUGGGCCUAUCCGUUAACUGAUUG -----..((((((((.(((((((........))))))).))).)))))((.((((((..(((..((......))..)))..)))))).)).((((((.........))))))........ ( -29.70) >DroPse_CAF1 5963 111 + 1 ---------AUUGUAUCCUACAGUUUGGACUCUGUGAGCCAGUUAAAAGACUGUGGUUUGCGAUCCGAGGAUGGACUGAUUGCCACAUUGAUGAUGGUUGGCCUGUCCGUAAGCUGGUUG ---------((((((..(((((((((.....(((.....))).....)))))))))..))))))(((...((((((.(...((((((....)).))))...)..))))))....)))... ( -32.90) >DroWil_CAF1 11392 119 + 1 -AUCGAUUGAAAUUAUCCUACAGCUUGGACUCUGUGAGCCAAUUAAAGGAUUGCGGCUUACGAUCCGAUGAUGGACUAAUGGCCACAUUGAUAAUGGUGGGCCUGUCCGUUAAUUGAUUG -..((((..(..............(((((.((.(((((((((((....))))..))))))))))))))((((((((....((((.((((......)))))))).)))))))).)..)))) ( -38.50) >DroMoj_CAF1 8389 120 + 1 AAUCAAUGUGCUUUGUUUUAUAGUUUGGACUCUGUGAGCCAGUUGAACGAUUGUGGCUUGCGAUCAGAGGAGGGACUGAUAGCCACAUUUAUGAUGGUAGGCCUAUCCGUCAGCUGGUUG .................((((((........))))))(((((((((..(((...(((((((.((((......((........)).......)))).))))))).)))..))))))))).. ( -36.92) >DroPer_CAF1 7580 111 + 1 ---------AUUGUAUCCUACAGUUUGGACUCUGUGAGCCAGUUAAAAGACUGUGGUUUGCGAUCCGAGGAUGGACUGAUCGCCACAUUGAUGAUGGUUGGCCUGUCCGUAAGCUGGUUG ---------((((((..(((((((((.....(((.....))).....)))))))))..))))))(((...((((((.(..(((((((....)).))).))..).))))))....)))... ( -33.90) >consensus ______U__AUUGUAUCCUACAGUUUGGACUCUGUGAGCCAGUUAAAAGACUGUGGCUUGCGAUCCGAGGAUGGACUGAUGGCCACAUUGAUGAUGGUUGGCCUGUCCGUAAGCUGAUUG ....................(((((((((.((.(((((((((((....))))..))))))))))))))..((((((.....(((.((((...))))...)))..))))))..)))).... (-24.94 = -24.25 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:18 2006