Locus 4791

Sequence ID 2R_DroMel_CAF1
Location 15,754,455 – 15,754,552
Length 97
Max. P 0.664145
window7696

overview

Window 6

Location 15,754,455 – 15,754,552
Length 97
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 85.04
Mean single sequence MFE -31.04
Consensus MFE -23.61
Energy contribution -23.55
Covariance contribution -0.06
Combinations/Pair 1.21
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 0.28
SVM RNA-class probability 0.664145
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15754455 97 + 20766785
GAGCCACCAGACUACUUUAAACGGUGGCCAUGACUUCAGAAAGUCAUUGGACCG--------AUU---GCAGUGAUUGAAAUGCUUUCAGGUUCAACGGAAACAUCGC
(.((((((..............))))))).((((((....))))))((((((((--------(..---(((..........)))..)).))))))).(....)..... ( -29.24)
>DroSec_CAF1 2969 97 + 1
GAGCCACCAGACCACUGUAAACGGUGGCCAUGACUUUGGAAAGUCAUUGGAGCG--------AUU---GCAGUGAUGGAAAUGUUUUCGGGUUCAAUGGAAACGUCGC
(((((.(((...((((((((.((....(((((((((....)))))).)))..))--------.))---)))))).)))...((....))))))).(((....)))... ( -32.10)
>DroSim_CAF1 3528 97 + 1
GAGCCACCAGACCACUGUAAACGGUGGCCAUGACUUCGGAAAGUCAUUGGACCG--------AUU---GCAGUGAUGGAAAUGCUUUCGGGUUCAAUGGAAACGUCGC
(((((.......((((((((.((((..(((((((((....)))))).)))))))--------.))---)))))).(((((....)))))))))).(((....)))... ( -35.50)
>DroYak_CAF1 3605 108 + 1
GCGCCACCAGACCACUGUAAACGAUGGCCCUGACUUCGGAAAGUCAUUGGACUGCGACACCAAUUUAAUCACCGAUUGAAAUGCUUUCGGGUUCAGCGGAAACGUCGU
.......(((....)))...((((((.((((((.(((((((((((....)))).......((.(((((((...))))))).)).))))))).)))).))...)))))) ( -27.30)
>consensus
GAGCCACCAGACCACUGUAAACGGUGGCCAUGACUUCGGAAAGUCAUUGGACCG________AUU___GCAGUGAUGGAAAUGCUUUCGGGUUCAACGGAAACGUCGC
(((((.((((.((((((....))))))...((((((....))))))))))......................(((..(.....)..)))))))).(((....)))... (-23.61 = -23.55 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:17 2006