Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,688,400 – 2,688,518 |
Length | 118 |
Max. P | 0.637211 |
Location | 2,688,400 – 2,688,518 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 85.31 |
Mean single sequence MFE | -49.98 |
Consensus MFE | -38.13 |
Energy contribution | -38.63 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.35 |
Mean z-score | -2.22 |
Structure conservation index | 0.76 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2688400 118 - 20766785 UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCUCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGAAUGAAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU ...(((...(((..(.....)..)))...))).(((((((((....(((((((((((((((.((..(((.(((....))).)))..)).)))))))))..)))))))))))))))... ( -53.20) >DroSec_CAF1 2022 118 - 1 UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCCCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUGGGAAUGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU ...(((...(((..(.....)..)))...))).(((((((((....(((((((((((((((.(((..((.(((....))).))..))).)))))))))..)))))))))))))))... ( -55.30) >DroSim_CAF1 576 118 - 1 UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCCCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGAAUGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU ...(((...(((..(.....)..)))...))).(((((((((....(((((((((((((((.(((..((.(((....))).))..))).)))))))))..)))))))))))))))... ( -53.60) >DroEre_CAF1 881 118 - 1 UGGCGAAUAGAGUGCUUCUUUUCCUCGAGUCGUUCGUUCAAGACACGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGGUGGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCG ..((((...(((...........)))...))))(((..((((....(((((((((((((((.(((..(.((((....)))).)..))).)))))))))..))))))))))..)))... ( -48.40) >DroYak_CAF1 576 118 - 1 UGUCGAAUGGAGUGUUUCUUGUCCUCGAGUCGUUCGGUCAGGAACUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGGUGUCAGGCGGGUGGCAGCCAGCUCCUUUUGUGUGACCU ....((((((..((...........))..))))))(((((.(....(((((((((((((((.((.((.(((((.....)).))))))).)))))))))..))))))....).))))). ( -50.80) >DroAna_CAF1 11330 118 - 1 UGUUGGAUAGACUCCUUCUUCUCCUCGAGUUGCUUAACCAGCACCUCGGAGCGUUGCCACUGGCUCUCGGGGGCAUCGGGGGGCAAGUUUAUGGCAGCUACUUCCUUUUGGGUCACCU .........(((((......((((..(((.((((.....)))).))))))).(((((((((.((((((.((....)).)))))).)))....))))))...........))))).... ( -38.60) >consensus UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCCCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGAAGGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU ...(((...(((..(.....)..)))...))).((((((((((....((((((((((((((.(((.....(((....))).....))).)))))))))..)))))))))))))))... (-38.13 = -38.63 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:38 2006