Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,747,653 – 15,747,773 |
Length | 120 |
Max. P | 0.969993 |
Location | 15,747,653 – 15,747,773 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.78 |
Mean single sequence MFE | -40.66 |
Consensus MFE | -35.90 |
Energy contribution | -35.90 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.88 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15747653 120 + 20766785 CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUACGAACUUUUUUUGUCUAACUAUCUGGAUUUAUAAACCUUAA ((((.......))))(((((((((((((((((((((((((...))))))((((.(((.......))))))))).)))).((((.....))))))).)))).))))))............. ( -41.70) >DroSec_CAF1 526 119 + 1 CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUAUCAACUUU-UUUGUCAAACUAUCUAGACUUGUAAAACUAAA ...((((..(.((((((((((.(((.((((((((((((((...))))))((((.(((.......))))))))).)))).)).)))..-.)))...))))))).)..)))).......... ( -39.80) >DroSim_CAF1 522 119 + 1 CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUACGAACUUU-UUUGUCAAACUAUCUGGUUUGGUAAAACUAAA ((((.......))))((((.(((((((.........)))))))(((..(((((.(((.......)))))))).)))....))))..(-(((..((((((....))))))..))))..... ( -45.80) >DroEre_CAF1 529 111 + 1 UACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAGAAAACUUUUUUCUGCCAACCAAUCU-------UAAAACUU-- .(((.......)))((((...(((((((((((((((((((...))))))((((.(((.......))))))))).)))..........))))))))...)))).-------........-- ( -38.90) >DroYak_CAF1 572 99 + 1 CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUAUCACUUUUUUUU-------------------UAACUAUC-- ((((.......))))....(((((((...(((((((((((...))))))((((.(((.......))))))))).)))))))))).......-------------------........-- ( -37.10) >consensus CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUACCAACUUUUUUUGUCAAACUAUCU_G__U__UAAAACUAAA ......(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............................................ (-35.90 = -35.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:14 2006