Locus 4788

Sequence ID 2R_DroMel_CAF1
Location 15,744,323 – 15,744,424
Length 101
Max. P 0.787032
window7692

overview

Window 2

Location 15,744,323 – 15,744,424
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 90.30
Mean single sequence MFE -37.28
Consensus MFE -35.90
Energy contribution -35.90
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.96
SVM decision value 0.57
SVM RNA-class probability 0.787032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15744323 101 + 20766785
GGCACUUAUUAUUUCAGCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAGAAUUCUUU
....................(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))........... ( -35.90)
>DroSec_CAF1 624852 101 + 1
GGCACCUUGACUUACAAGAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACAACUUCU
.....((((.....))))..(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))........... ( -37.90)
>DroSim_CAF1 527639 101 + 1
GGCACUUUGACUUACAAGAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACAACUUUU
....................(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))........... ( -35.90)
>DroEre_CAF1 524774 101 + 1
AACACUUCGAUUUUCACGAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUAACACUUUU
.....((((.......))))(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))........... ( -37.20)
>DroYak_CAF1 543603 101 + 1
GACACCUUGACUUUCACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUAUCACUUUU
...(((((((...(((((.......))))).)))).))).((((((((((((((...))))))((((.(((.......))))))))).)))).))...... ( -39.50)
>consensus
GGCACUUUGACUUUCAAGAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAAAAACUUUU
....................(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))........... (-35.90 = -35.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:13 2006