Locus 4787

Sequence ID 2R_DroMel_CAF1
Location 15,742,594 – 15,742,684
Length 90
Max. P 0.690723
window7691

overview

Window 1

Location 15,742,594 – 15,742,684
Length 90
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 83.47
Mean single sequence MFE -31.92
Consensus MFE -19.41
Energy contribution -20.13
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -2.91
Structure conservation index 0.61
SVM decision value 0.33
SVM RNA-class probability 0.690723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15742594 90 - 20766785
AUUAACAAAGCGCCAUUGUGUGGCACGAACGGC--------------------AGCAACAAUGAUGGCCAAGUCAGGGGACAG---CUGCGA-AAAUGGCGCACAUUCGGCGCU
........((((((..((((((.((......((--------------------(((.....((((......))))(....).)---))))..-...)).))))))...)))))) ( -34.70)
>DroSec_CAF1 623055 90 - 1
AUUAACAAAGCGCCAUUGUGUGGCACGAACGGC--------------------AGCAACAAUAAUGGCCAAGUCAGGGGACAG---CUGCGA-AAAUGGCGCACAUUCGGCGCU
........((((((..((((((.((......((--------------------(((........((((...))))(....).)---))))..-...)).))))))...)))))) ( -33.80)
>DroSim_CAF1 525858 90 - 1
AUUAACAAAGCGCCAUUGUGUGGCACGAACGGC--------------------AGCAACAAUAAUGGCCAAGUCAGGGGACAG---CUGCGA-AAAUGGCGCACAUUCGGCGCU
........((((((..((((((.((......((--------------------(((........((((...))))(....).)---))))..-...)).))))))...)))))) ( -33.80)
>DroEre_CAF1 522946 90 - 1
AUUAACAAAGCGCCAUUGUGUGGCACGAACGGC--------------------AGCAACAAUAAUGGCCAAGUCAGGGGACAG---CUGUGA-AAAUGGCGCACAUUCGGCGCU
........((((((..((((((.((......((--------------------(((........((((...))))(....).)---))))..-...)).))))))...)))))) ( -32.20)
>DroWil_CAF1 1000571 114 - 1
AUUAACAAAGCGCCAUUGUGUGGCACGAACGCCGAUCAAAAUGGUUCAGAAAGAGCAAGGACAAUGGCAACAGAAAACGACAACAACAACAAAAUAUGGCGUACAAGCUGCGCU
...........((((((((.((((......)))..........((((.....))))..).)))))))).............................((((((.....)))))) ( -26.70)
>DroYak_CAF1 541829 90 - 1
AUUAACAAAGCGCCAUUGUGUGGCACGAACGGC--------------------AGCAACAAUAAUGGCCAAGUCAGGGGACAG---CUGCGA-AAAUGGCGAACACUCGGCGCU
........((((((...((((.((.......((--------------------(((........((((...))))(....).)---))))..-.....))..))))..)))))) ( -30.34)
>consensus
AUUAACAAAGCGCCAUUGUGUGGCACGAACGGC____________________AGCAACAAUAAUGGCCAAGUCAGGGGACAG___CUGCGA_AAAUGGCGCACAUUCGGCGCU
........((((((..((((((.((.............................((..........))...(((....)))...............)).))))))...)))))) (-19.41 = -20.13 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:12 2006