Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,737,165 – 15,737,258 |
Length | 93 |
Max. P | 0.733853 |
Location | 15,737,165 – 15,737,258 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -10.15 |
Consensus MFE | -9.39 |
Energy contribution | -9.45 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.69 |
Structure conservation index | 0.92 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15737165 93 - 20766785 CACAAACACUCUACUAAACACUUUGCCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU ........................(((((....)))))................................((((((........))))))... ( -11.70) >DroSec_CAF1 613186 93 - 1 CACAAACACUCCACUAAACACUUUGCCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU ........................(((((....)))))................................((((((........))))))... ( -11.70) >DroSim_CAF1 520634 93 - 1 CACAAACACUCCACUAAACACUUUGGCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU ....................((.((((...)))).)).................................((((((........))))))... ( -7.80) >DroYak_CAF1 536342 93 - 1 CACAAACACUCUGCUAAACACUUUGCUAUCAUCAUGGCUCUUUAAUAAACUAUUUCUACUAUCUAAUAAAGCAAAUGAAAUACAAUUUGCAUU ........................(((((....)))))................................((((((........))))))... ( -9.40) >consensus CACAAACACUCCACUAAACACUUUGCCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU ........................(((((....)))))................................((((((........))))))... ( -9.39 = -9.45 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:08 2006