Locus 4784

Sequence ID 2R_DroMel_CAF1
Location 15,735,442 – 15,735,538
Length 96
Max. P 0.562828
window7686

overview

Window 6

Location 15,735,442 – 15,735,538
Length 96
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 81.76
Mean single sequence MFE -26.65
Consensus MFE -16.44
Energy contribution -16.75
Covariance contribution 0.31
Combinations/Pair 1.28
Mean z-score -1.79
Structure conservation index 0.62
SVM decision value 0.06
SVM RNA-class probability 0.562828
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15735442 96 + 20766785
UAUCAAGUGGAAGUCUUUCGGUUGCGGUGACAGCAACUGGACCAAAAAAAACUCCAU-----GUAGAUGCGGCAUGGCUAGUGGAACAGCCACAACAAGUU
......((((...(((((((((((((....).))))))))).........(((((((-----((.......))))))..))))))....))))........ ( -28.80)
>DroSec_CAF1 611505 94 + 1
UAUCAAGUGGAAGUCUUUCGGUUGCGGUGACAGCAACUGGACCAAA--AAACUCCAU-----GUAGAUGCCGCAUGGCUAGUGGAACAGCCACAACAAGUU
......((((..((..((((((((((....).)))))))))(((..--.....((((-----((.......))))))....))).))..))))........ ( -28.90)
>DroSim_CAF1 518966 94 + 1
UAUCAAGUGGAAGUCUUUCGGUUGCGGUGACAGCAACUGGACCAAA--AAACUCCAU-----GUAGAUGCCGCAUGGCUAGUGGAACAGCCACAACAAGUU
......((((..((..((((((((((....).)))))))))(((..--.....((((-----((.......))))))....))).))..))))........ ( -28.90)
>DroEre_CAF1 515827 94 + 1
UAUCAAGUGGAAGUCUUUCGGUUGCGGUGACAGCAACUGGACCAAA--AAACUCCAU-----GUAGAUGCGGCAUGGCUGCUGGAACAGCCACAACAAGUU
((((..(((((.((..((((((((((....).))))))))).....--..)))))))-----...)))).(...((((((......))))))...)..... ( -28.40)
>DroYak_CAF1 534672 99 + 1
UAUCAAGUGGAAGUCUUUCGGUUGCGGUGACAGCAACUGGACCAAA--AAACUCCAUCUACUAUAGAUGCGGCAUGGCUGGUGGAACAGCCACAACAAGUU
............(((.((((((((((....).))))))))).....--......((((((...)))))).))).((((((......))))))......... ( -30.10)
>DroAna_CAF1 499792 79 + 1
UAUCAAGUUGAAGUCCUUUGGU---------ACUAACUGAACCAAA--AAAAACACUGA---ACAAAUUUCG--------AUGGGGAGACCGCAGCAAGUU
......((((......((((((---------.(.....).))))))--.....((.(((---(.....))))--------.))((....)).))))..... ( -14.80)
>consensus
UAUCAAGUGGAAGUCUUUCGGUUGCGGUGACAGCAACUGGACCAAA__AAACUCCAU_____GUAGAUGCCGCAUGGCUAGUGGAACAGCCACAACAAGUU
......((((...((((((((((((.......)))))))))...........................((......))....)))....))))........ (-16.44 = -16.75 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:07 2006