Locus 4782

Sequence ID 2R_DroMel_CAF1
Location 15,730,398 – 15,730,496
Length 98
Max. P 0.517121
window7684

overview

Window 4

Location 15,730,398 – 15,730,496
Length 98
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 90.23
Mean single sequence MFE -26.47
Consensus MFE -20.86
Energy contribution -20.67
Covariance contribution -0.19
Combinations/Pair 1.10
Mean z-score -2.28
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.517121
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15730398 98 - 20766785
UCGCUACUGCUUUUGCUGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUUUUUAAAGAAAUAAUUGCUUUGCCGCAUGUUGGCCAGCA----------C-GGCU
..((....((....)).))....(((..((((.(((((((((((.((((((.(((((....)))))))))))..)).)))).)))))..))))----------.-))). ( -26.70)
>DroPse_CAF1 574688 108 - 1
UUGCUGCUUCUGUUGUUGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUU-UUAAAGAAAUAAUUGCUUUGCCGCAUGUUGCUGGGAUUGCCUUGGUCCGGACU
..((.((....((((..(((((....)))))...))))((((((.((((((.(((-((...)))))))))))..)).)))).)).))..(((((.....)))))..... ( -22.20)
>DroSec_CAF1 606704 98 - 1
CCGCUACUGCUUUAGCUGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUUUUUAAAGAAAUAAUUGCUUUGCCGCAUGUUGGCCAGUA----------C-GGCU
(((.((((((..((((.......))))..))..(((((((((((.((((((.(((((....)))))))))))..)).)))).)))))..))))----------)-)).. ( -29.60)
>DroSim_CAF1 514148 98 - 1
CCGCUACUGCUUUUGCUGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUUUUUAAAGAAAUAAUUGCUUUGCCGCAUGUUGGCCAGCA----------C-GGCU
..((....((....)).))....(((..((((.(((((((((((.((((((.(((((....)))))))))))..)).)))).)))))..))))----------.-))). ( -26.70)
>DroEre_CAF1 510823 98 - 1
CCGCUACUGCUUUUGCUGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUUUUUAAAGAAAUAAUUGCUUUGCCGCAUGUUGGCCAGCU----------C-GGCU
..((....((....)).))....(((...(((.(((((((((((.((((((.(((((....)))))))))))..)).)))).)))))..))).----------.-))). ( -26.00)
>DroYak_CAF1 529657 98 - 1
CUGCUACUGCUUUUGCAGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUUUUUAAAGAAAUAAUUGCUUUGCCGCAUGUUGGCCAGCU----------C-GGCU
......((((....)))).....(((...(((.(((((((((((.((((((.(((((....)))))))))))..)).)))).)))))..))).----------.-))). ( -27.60)
>consensus
CCGCUACUGCUUUUGCUGCAAUUGCUAUUGCUACCAAUUGUGCAUGCAAUUUAUUUUUAAAGAAAUAAUUGCUUUGCCGCAUGUUGGCCAGCA__________C_GGCU
........(((......(((((....)))))..(((((((((((.((((((.(((((....)))))))))))..)).)))).)))))..)))................. (-20.86 = -20.67 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:05 2006