| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,721,888 – 15,721,988 |
| Length | 100 |
| Max. P | 0.914998 |
| Location | 15,721,888 – 15,721,988 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.99 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -15.57 |
| Energy contribution | -18.45 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.914998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15721888 100 + 20766785 GUUGAUGUCGUUGGUGGUGUUGCUGCCGCUGCC---GCUGCU--GCAUCAGCCAGCAGCAACACUUCAG---UGGAGUCAGCAAUUUUAUUAAAACCGGACGCUUACU ((((((..((((((.(((((((((((.((((..---((....--))..))))..)))))))))))))))---))..)))))).......................... ( -37.90) >DroSec_CAF1 598331 97 + 1 GUUGAUGUCGUUGGUGGUGUUGCUGCC------GCUGCUGCU--GCAUCAGCCAGCAGCAACACUUGAG---CGGAGUCAGCAAUUUUAUUAAAACCGGACGCUUACU ((((((..((((.(.(((((((((((.------((((.((..--.)).))))..)))))))))))).))---))..)))))).......................... ( -36.50) >DroMoj_CAF1 799855 84 + 1 GUUGCUCUCG---------------CUGC---------AGCCAAGCAGGAGGCUGCGUCAGCACUUGAGCAGCGGCGGCAGCAAUUUUAUUAAAACCGGACGCAUAGC ((((((.(((---------------((((---------((((........))))((....))......))))))).)))))).......................... ( -29.80) >DroAna_CAF1 487433 94 + 1 GUUGAUGUUGCAGCUUGUGUUGCUUUU------GUUGCUGUU--G---CAGCCGGCAGCAACACUUGAG---CAGAGUCAGCAAUUUUAUUAAAACCGGACGCGUACU ((((((.((((..(..(((((((((..------(((((....--)---))))..).))))))))..).)---))).)))))).......................... ( -30.60) >consensus GUUGAUGUCGUUGGUGGUGUUGCUGCC_________GCUGCU__GCAUCAGCCAGCAGCAACACUUGAG___CGGAGUCAGCAAUUUUAUUAAAACCGGACGCUUACU ((((((.(((.....(((((((((((..........((((........))))..))))))))))).......))).)))))).......................... (-15.57 = -18.45 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:04 2006