Locus 4779

Sequence ID 2R_DroMel_CAF1
Location 15,717,268 – 15,717,370
Length 102
Max. P 0.989141
window7681

overview

Window 1

Location 15,717,268 – 15,717,370
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 90.73
Mean single sequence MFE -18.09
Consensus MFE -17.70
Energy contribution -17.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 0.98
SVM decision value 2.15
SVM RNA-class probability 0.989141
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15717268 102 - 20766785
AUAUUUCACUCAUUUUCGUUUGUCAACAAACGGGCAACGAGGAGACUGGUUCCCGAUACUCCAUCCAAACUACCCCUUCCUAUAUCGUAUACCAUACCAUAC
...((((.(((.....((((((....))))))(....)))))))).((((...(((((........................)))))...))))........ ( -18.86)
>DroSec_CAF1 593734 92 - 1
AUAUUUCACUCAUUUUCGUUUGUCAACAAACGGGCAACGAGGAGACUGGUUCCCGAUACUCCAUCCUAACUACCCCUUCCUAUAUCGUAUAC----------
...............(((((((....)))))(((.(((.((....)).))))))))....................................---------- ( -17.70)
>DroSim_CAF1 499955 98 - 1
AUAUUUCACUCAUUUUCGUUUGUCAACAAACGGGCAACGAGGAGACUGGUUCCCGAUACUCCAUCCAAACUACCCCUUCCUAUAUACCAUAC----CCAUAC
...............(((((((....)))))(((.(((.((....)).))))))))....................................----...... ( -17.70)
>consensus
AUAUUUCACUCAUUUUCGUUUGUCAACAAACGGGCAACGAGGAGACUGGUUCCCGAUACUCCAUCCAAACUACCCCUUCCUAUAUCGUAUAC____CCAUAC
...............(((((((....)))))(((.(((.((....)).)))))))).............................................. (-17.70 = -17.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006