Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,713,584 – 15,713,679 |
Length | 95 |
Max. P | 0.823391 |
Location | 15,713,584 – 15,713,679 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 91.16 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -23.90 |
Energy contribution | -23.98 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.38 |
Structure conservation index | 0.89 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15713584 95 + 20766785 GGAGGGCAAAAGUGUAUCCAGUG---------UAUUCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAAUAUA ..(((((.....(((((((.(((---------.((((.((((....)))).)))).).)).)))))))......)))))(((((.......)))))........ ( -23.80) >DroSec_CAF1 590114 93 + 1 GGAGGGCAAAAGUGUAUCCAGUG---------UAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA ..(((((.....(((((((....---------.((((.......))))((((....)))).)))))))......)))))(((((.......)))))....--.. ( -26.20) >DroSim_CAF1 496326 93 + 1 GAAGGGCAAAAGUGUAUCCAGUG---------UAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA ..(((((.....(((((((....---------.((((.......))))((((....)))).)))))))......)))))(((((.......)))))....--.. ( -26.10) >DroEre_CAF1 494062 102 + 1 GGAGGGCAAAAGUAUAACCAGUGUAUCCAGUCUGUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA ((((((((.(.(((((.....)))))....).))))).(((((((...((((....)))))))))))........))).(((((.......)))))....--.. ( -25.50) >DroYak_CAF1 512069 100 + 1 GGAGGGCAAAAAUGUAUCCAGUGGAU--AGUGGAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA ..(((((.....(((((((.((((((--(.((....)).)))))((((.....)))).)).)))))))......)))))(((((.......)))))....--.. ( -32.20) >consensus GGAGGGCAAAAGUGUAUCCAGUG_________UAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA__UA ..(((((.....(((((((..............((((.......))))((((....)))).)))))))......)))))(((((.......)))))........ (-23.90 = -23.98 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006