Locus 4774

Sequence ID 2R_DroMel_CAF1
Location 15,705,131 – 15,705,230
Length 99
Max. P 0.948575
window7676

overview

Window 6

Location 15,705,131 – 15,705,230
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.33
Mean single sequence MFE -24.42
Consensus MFE -12.57
Energy contribution -13.18
Covariance contribution 0.61
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.51
SVM decision value 1.38
SVM RNA-class probability 0.948575
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15705131 99 - 20766785
CAAAAGCAAAGACAAUAAAUCUGCAGCAGCUUCUUUUCAGCGGCAAAUGAAAAUGUU-UGAAAGCGAAUGCUGCAAACAGCAG-----------GAG---GAGCUGGAGC---AGCA---
....................((((..((((((((((...((..(((((......)))-))...))...(((((....))))))-----------)))---))))))..))---))..--- ( -30.40)
>DroPse_CAF1 549300 102 - 1
CAAAAACAAAGACAAUAAAUCUGCAGCAGCUUCUUUUCAGCAACAAAUGAAAAUGUUUUGAAAGCGAAUGCUGCAG-CAGCAC-----------CAG---CAGCAACAGGGAUUGUG---
...........(((((...((((..(((((((((((((((.((((........))))))))))).))).))))).(-(.((..-----------..)---).))..)))).))))).--- ( -28.20)
>DroWil_CAF1 928830 100 - 1
ACAAAACAAAGACAAUAAAUCUGCAGCAGCUUCUUUUCAGCGGCAAAUGAAAAUGUUUUGAGCGCAAAAGAUGCAAGCAGUAA-----------GAG---AGAGAGAAAG---AGAU---
....................((((....((.((((((..(((.((((.........))))..))))))))).))..))))...-----------...---..........---....--- ( -15.10)
>DroMoj_CAF1 777092 97 - 1
GCAAGGCAAAGACAAUAAAUCUGCAGCAGCUUCUUUUCAGCGGCAAAUGAAAAUGUUUUGAAAGCGAAUGCAGGCAGCAGCAG-----------GAGUCGAAGCUG---GA---------
....(((...(((.......(((((...((((....((((.((((........))))))))))))...)))))((....))..-----------..)))...))).---..--------- ( -22.00)
>DroAna_CAF1 471169 113 - 1
CAAAAACAAAGACAAUAAAUCUGAAGCAGCUUCUUUUCAGCGGCAAAUGAAAAUGUU-UGAAAGCGAAUGCUGCAACUUGAAGUCCACAGAGAGAAG---GGGGUUGUAA---AAGGGAA
...................(((...(((((((((((((.(((((..((....))(((-((....))))))))))..((((.....)).)).))))).---))))))))..---.)))... ( -22.60)
>DroPer_CAF1 508249 102 - 1
CAAAAACAAAGACAAUAAAUCUGCAGCAGCUUCUUUUCAGCAACAAAUGAAAAUGUUUUGAAAGCGAAUGCUGCAG-CAGCAC-----------CAG---CAGCAACAGGGAUUGUG---
...........(((((...((((..(((((((((((((((.((((........))))))))))).))).))))).(-(.((..-----------..)---).))..)))).))))).--- ( -28.20)
>consensus
CAAAAACAAAGACAAUAAAUCUGCAGCAGCUUCUUUUCAGCGGCAAAUGAAAAUGUUUUGAAAGCGAAUGCUGCAA_CAGCAG___________GAG___AAGCAGCAGG___AGUG___
....................(((..(((((((((((((((.((((........))))))))))).))).)))))...)))........................................ (-12.57 = -13.18 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:58 2006