Locus 4772

Sequence ID 2R_DroMel_CAF1
Location 15,700,990 – 15,701,097
Length 107
Max. P 0.744042
window7673

overview

Window 3

Location 15,700,990 – 15,701,097
Length 107
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 75.71
Mean single sequence MFE -19.64
Consensus MFE -12.40
Energy contribution -12.40
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.63
Structure conservation index 0.63
SVM decision value 0.46
SVM RNA-class probability 0.744042
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15700990 107 + 20766785
U----UGUUUCCAAGGAAUUCUAAUAAAAUGCAUUACAUGCUCAUAAAUGUAUUAGAAUUCUGUU-------CCACAAACAAAAAUGUAGUUCAUUUUAAAACACCAAUUUCAUUGGC
.----(((((....((((((((((((....((((...)))).........))))))))))))...-------....)))))((((((.....))))))......(((((...))))). ( -19.32)
>DroSec_CAF1 577658 94 + 1
G------------------------CAAAUGCAUUACACGCUCAUAAAUGUAUUAGAAUUCUGUGCAAUUGACCGCAAACAAAAAUGUAGUUCAUUUGAAAAUACCAAAUUCAUUGGC
.------------------------((((((.((((((((.(((....(((((.((....)))))))..))).))..........)))))).))))))......((((.....)))). ( -16.30)
>DroSim_CAF1 483827 118 + 1
GAGCCAGUUUUCCAGGAAUGCGAAUCAAAUGCAUUACACGCUCAUAAAUGUAUUAGAAUUUUGUGCAAUUGACCGCAAACAAAAAUGUAGUUCAUUUGAAAAUACCAAAUUCAUUGGC
..((((((......((..((((..((((.(((((......((.(((....))).))......))))).)))).)))).....(((((.....))))).......))......)))))) ( -23.30)
>consensus
G_____GUUU_C_AGGAAU_C_AAUCAAAUGCAUUACACGCUCAUAAAUGUAUUAGAAUUCUGUGCAAUUGACCGCAAACAAAAAUGUAGUUCAUUUGAAAAUACCAAAUUCAUUGGC
........................(((((((.((((((.((........))..........((((........))))........)))))).))))))).....((((.....)))). (-12.40 = -12.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:55 2006