Locus 4771

Sequence ID 2R_DroMel_CAF1
Location 15,700,694 – 15,700,786
Length 92
Max. P 0.829348
window7672

overview

Window 2

Location 15,700,694 – 15,700,786
Length 92
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 90.45
Mean single sequence MFE -30.72
Consensus MFE -24.09
Energy contribution -23.28
Covariance contribution -0.81
Combinations/Pair 1.29
Mean z-score -2.02
Structure conservation index 0.78
SVM decision value 0.71
SVM RNA-class probability 0.829348
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15700694 92 - 20766785
ACUGUCUUCCCUCGUUGUCGUGGGCAACAAGUGCAGAUGGCUGGAUG-GAUGUACAUGGACGGGGAUGUGGCUAUGGAUGCGGAAGGCAGGGA
.(((((((((...(((((.....)))))....(((.(((((((.((.-..(((......)))...)).)))))))...))))))))))))... ( -32.60)
>DroSec_CAF1 577405 93 - 1
ACUGUCUUGCCUUGUUGUCUUGGGCAACAAGUGCAGAUGGCUGGAUGGGAUGUACAUGGACGGGGAUGUGGCCAUGAAUGUGGAAGGCAGGGA
.(((((((((((((((((.....)))))))).))..(((((((.((....(((......)))...)).)))))))........)))))))... ( -32.10)
>DroSim_CAF1 483551 92 - 1
ACUGUCUUGCCUCGUUGUCGUGGGCAACAAGUGCAGAUGGCUGGAUG-GAUGUACAUGGACGGGGAUGUGGCUAUGAAUGUGGAAGGCAGGGA
.(((((((.(((((((..((((..((....((.(((....))).)).-..))..)))))))))))......((((....)))))))))))... ( -28.90)
>DroEre_CAF1 481557 90 - 1
ACUGUCUUCCC-CGUUGUCGUGGGCAACAAGUGGAGAUGGCUGGAUG-GAUGUACAUAGAUGG-GAUGGGUUUGUGGACGUGGAAGGCAGGGA
.((((((((((-(((..((...(....).......))..)).))...-.((((.(((((((..-.....))))))).)))))))))))))... ( -29.30)
>consensus
ACUGUCUUCCCUCGUUGUCGUGGGCAACAAGUGCAGAUGGCUGGAUG_GAUGUACAUGGACGGGGAUGUGGCUAUGAAUGUGGAAGGCAGGGA
.(((((((.((.(((((((((..(((.....)))..))))).............(((((.((......)).))))))))).)))))))))... (-24.09 = -23.28 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:54 2006