Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,687,367 – 15,687,470 |
Length | 103 |
Max. P | 0.800298 |
Location | 15,687,367 – 15,687,470 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -15.18 |
Energy contribution | -16.94 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.05 |
Mean z-score | -2.53 |
Structure conservation index | 0.50 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15687367 103 + 20766785 UGGGCACACAAAAUCC-CACUGGAAUCCGACC--CAAUGAAUAUGGCCACGGGGAAUCCAUCCGGAUACGUAUCC--CCCAACCACGGAUCCACAUGCCUUGCGUUCA .(((((......((((-((.(((........)--)).))....(((....(((((((((....)))).....)))--))...))).)))).....)))))........ ( -25.60) >DroSec_CAF1 564387 101 + 1 UGGGCACACGAAAUCC-CACUGGAAUCCGACC--CAAUGAAAAUGGCCACAGGGAAA----CCGGAUACGGAUCCCCCCCAACCAGGGAUCCACGUGCCUUGCGUUCA .((((((.....((((-((.(((........)--)).))............((....----))))))..(((((((.........)))))))..))))))........ ( -34.60) >DroSim_CAF1 468245 100 + 1 UGGGCACACAAAAUCC-CACUGGAAUCCGACC--CAAUGAAAAUGGCCACAGGGAAA----CCGGAUACGGAUCCC-CCCAACCAGGGAUCCACGUGCCUUGCGUUCA .((((((.....((((-((.(((........)--)).))............((....----))))))..(((((((-........)))))))..))))))........ ( -35.40) >DroEre_CAF1 467174 84 + 1 UGGGCACACAAAAUCC-CGCCGGAAUCCGACC--CAAUGAAAAUGGCCAAAGGGAAU----CCGGAUACGGAACCCC-------------CCA----CCUGGCGUUCA .(((..........))-)(((((........(--((.(....)))).....(((..(----(((....))))..)))-------------...----.)))))..... ( -22.70) >DroYak_CAF1 485131 99 + 1 UGGGCACAUAAAAUCCCCACCGGAAUCCGACCCCCCAUGAAAAUGGC-AAAGGGAAU----CCGGAUACGGAUCCCC---AAC-AACGAUCCACGUGCCUUGCGUUCA .((((((............(((((.(((......((((....)))).-....))).)----))))....(((((...---...-...)))))..))))))........ ( -33.70) >consensus UGGGCACACAAAAUCC_CACUGGAAUCCGACC__CAAUGAAAAUGGCCACAGGGAAU____CCGGAUACGGAUCCCCCCCAACCAGGGAUCCACGUGCCUUGCGUUCA .((((((............((((..(((........................)))......))))....((((((...........))))))..))))))........ (-15.18 = -16.94 + 1.76)
Location | 15,687,367 – 15,687,470 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -39.90 |
Consensus MFE | -17.66 |
Energy contribution | -19.86 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.45 |
Structure conservation index | 0.44 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15687367 103 - 20766785 UGAACGCAAGGCAUGUGGAUCCGUGGUUGGG--GGAUACGUAUCCGGAUGGAUUCCCCGUGGCCAUAUUCAUUG--GGUCGGAUUCCAGUG-GGAUUUUGUGUGCCCA .........((((((..((((((((((((((--((((.(((......))).))))))))..)))))...(((((--((......)))))))-))).))..)))))).. ( -41.00) >DroSec_CAF1 564387 101 - 1 UGAACGCAAGGCACGUGGAUCCCUGGUUGGGGGGGAUCCGUAUCCGG----UUUCCCUGUGGCCAUUUUCAUUG--GGUCGGAUUCCAGUG-GGAUUUCGUGUGCCCA .........((((((((((((((((((((.((((((.(((....)))----.)))))).)))))).....((((--((......)))))))-))).)))))))))).. ( -44.60) >DroSim_CAF1 468245 100 - 1 UGAACGCAAGGCACGUGGAUCCCUGGUUGGG-GGGAUCCGUAUCCGG----UUUCCCUGUGGCCAUUUUCAUUG--GGUCGGAUUCCAGUG-GGAUUUUGUGUGCCCA .........((((((..((((((((((((.(-((((.(((....)))----..))))).)))))).....((((--((......)))))))-))).))..)))))).. ( -44.10) >DroEre_CAF1 467174 84 - 1 UGAACGCCAGG----UGG-------------GGGGUUCCGUAUCCGG----AUUCCCUUUGGCCAUUUUCAUUG--GGUCGGAUUCCGGCG-GGAUUUUGUGUGCCCA ((((.(((((.----.((-------------(((((.(((....)))----))))))))))))....)))).((--(((((((.(((....-))).))))...))))) ( -29.80) >DroYak_CAF1 485131 99 - 1 UGAACGCAAGGCACGUGGAUCGUU-GUU---GGGGAUCCGUAUCCGG----AUUCCCUUU-GCCAUUUUCAUGGGGGGUCGGAUUCCGGUGGGGAUUUUAUGUGCCCA .........((((((((((..((.-...---(((((((((....)))----))))))...-)).(((..(((.((((......)))).)))..))))))))))))).. ( -40.00) >consensus UGAACGCAAGGCACGUGGAUCCCUGGUUGGGGGGGAUCCGUAUCCGG____AUUCCCUGUGGCCAUUUUCAUUG__GGUCGGAUUCCAGUG_GGAUUUUGUGUGCCCA .........(((((..(((((((.........)))))))..((((((........))...((((............))))))))(((.....)))......))))).. (-17.66 = -19.86 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006