Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,681,477 – 15,681,570 |
Length | 93 |
Max. P | 0.886834 |
Location | 15,681,477 – 15,681,570 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.26 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -23.88 |
Energy contribution | -23.38 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.23 |
Mean z-score | -1.98 |
Structure conservation index | 0.86 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15681477 93 + 20766785 CUUUGGCCUUGCACAGGCUUAACCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGACACGG ....(((((.....)))))...(((..((((((((((.((...((..(((((.(((....))).))))).))..)).))))))))))...))) ( -29.50) >DroSec_CAF1 558630 92 + 1 CGUUGGCCUU-UACAGGCAUAAACGCUCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCACGG ((((.((((.-...))))...))))..((((((((((.((...((..(((((.(((....))).))))).))..)).))))))))))...... ( -28.90) >DroSim_CAF1 462331 92 + 1 CUUUGGCCUU-CACAGGCUUAACCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUUCUGCCACGG ....(((((.-...)))))...(((..(((..(((((.((...((..(((((.(((....))).))))).))..)).)))))..)))...))) ( -26.90) >DroEre_CAF1 461362 92 + 1 CUUUGGCCUG-CACAGGUUUAGCCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUGCUGCCACGG ((.((((.((-(((((((...(((((..(....)..)))))..))))).))))..........(((((((.........))))))))))).)) ( -29.60) >DroYak_CAF1 479095 92 + 1 CGUUGGCCUG-CACCGGCUUAACCGCUUGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCACGG (((.(((...-...(((.....)))...(((((((((.((...((..(((((.(((....))).))))).))..)).))))))))))))))). ( -28.40) >DroAna_CAF1 448109 92 + 1 CUUUGGCUUU-CACAAGUUUAACAGCUAAGGGAUUUGUGGUCUAUUUUUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCAAGG (((((((...-....(((......))).(((((((((.((...((...((((.(((....))).))))..))..)).)))))))))))))))) ( -23.00) >consensus CUUUGGCCUU_CACAGGCUUAACCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCACGG ...((((........(((......))).(((((((((.((.......(((((.(((....))).))))).....)).)))))))))))))... (-23.88 = -23.38 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:50 2006