Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,681,032 – 15,681,123 |
Length | 91 |
Max. P | 0.550479 |
Location | 15,681,032 – 15,681,123 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.27 |
Mean single sequence MFE | -29.21 |
Consensus MFE | -16.52 |
Energy contribution | -16.60 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.52 |
Structure conservation index | 0.57 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15681032 91 - 20766785 CC-----AAGGAGCAGCAUCACCAUC--------AGGCCGGCACAAAGAGCAGCGUGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGCCG ((-----(..(((..((((.((....--------((((.((((((((..((.....))..))))))))))))..)).))))...)))...)))........... ( -25.70) >DroVir_CAF1 664925 99 - 1 UU-----GAGGAGCUGCAGCUGCCUCCUGCAAGCCGAGCAGCACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGUCG ((-----(((.(((....))).)((((..(.......(((..((((((.((((((((.....))))))))))))))..)))........)..)))))))).... ( -35.06) >DroWil_CAF1 873583 84 - 1 AU-----AGGGACCUGCAA---------------GAGUCUGUACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUGAUGCAAAUUCAAGUGGGAGUCAAGUCG ..-----.((..((..(..---------------((((.(((((((((.((((((((.....))))))))))))))...))).))))..)..))..))...... ( -27.70) >DroMoj_CAF1 741081 89 - 1 UG-----GAGGAGCUGC----------UGCCAGCCGAGCUGCACAAAGAGCAGCGCGCAAUUUGUGUUGCUUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGACG ..-----........((----------(.(((((...(((((.......)))))..))((((((((((((....))))))))))))....))).)))....... ( -27.60) >DroAna_CAF1 447709 83 - 1 GC-----AAGGAGCUGCAUCCC----------------AGGCACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAGGUCG ..-----...((.(((..((((----------------(.((((((((.((((((((.....))))))))))))))...)).........)))))..))).)). ( -29.50) >DroPer_CAF1 483901 94 - 1 GCGAGCGAAGGAGCUGCAGCCUCCUC--------C--ACAGUACAAAGAGCAGCGCGCAAUUUGUGCGGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCGAGUCG .(((.(((((((((....).)))))(--------(--((..(((((((.((..(((((.....)))))))))))))).((......)).))))...)))..))) ( -29.70) >consensus GC_____AAGGAGCUGCAGC______________CG_GCAGCACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGUCG .........(((..((((........................((((((.((((((((.....))))))))))))))..))))..)))................. (-16.52 = -16.60 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:49 2006