Locus 4766

Sequence ID 2R_DroMel_CAF1
Location 15,679,206 – 15,679,300
Length 94
Max. P 0.930766
window7666

overview

Window 6

Location 15,679,206 – 15,679,300
Length 94
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 81.42
Mean single sequence MFE -20.80
Consensus MFE -12.17
Energy contribution -12.86
Covariance contribution 0.69
Combinations/Pair 1.11
Mean z-score -2.60
Structure conservation index 0.59
SVM decision value 1.21
SVM RNA-class probability 0.930766
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15679206 94 + 20766785
AUAAAAUGUUUAAUGAUGAGCUUUGCAUUAAAGUUAUAUGG---UAUGAUUUAAUGUACUAUUAGAAGCUAAAAGUCUUAGCGCAGGUCAUUAAGCA
......(((((((((((..((..(((((((((.(((((...---)))))))))))))).........(((((.....)))))))..))))))))))) ( -25.20)
>DroSec_CAF1 556373 86 + 1
AUAACAUGUUUAAUAAUGAGCUGUGCAUUAAAGUUAUAUGU---UAUGAUUUAAUGUACUAGUAGAGGCU--------UCAGUAUGGUCAUUAAGCA
......((((((((.....(((((((((((((.(((((...---))))))))))))))).)))...((((--------.......)))))))))))) ( -20.10)
>DroSim_CAF1 458759 89 + 1
AUAACAUGUUUAAUAAUGAGCUUUGCAUUAAAGUUAUAUGGUUAUAAGAUUUAAUGUACUAUUAGAGGCU--------UAACUAAGGUCAUUAAGCA
......((((((((..((((((((((((((((.(((((....)))))..)))))))).......))))))--------))((....)).)))))))) ( -17.71)
>DroYak_CAF1 476765 94 + 1
AAAACAUGUUUAAUAAUGAGCUGUGCAUUGUAAUUAUAUGG---UAUGAUUUAAUGUACUAUAAGAGACUUAAAGUCUUAACUGAGAUCAUUAAGCA
......((((((...((((.((((((((((.(((((((...---))))))))))))))).....(((((.....))))).....)).)))))))))) ( -20.20)
>consensus
AUAACAUGUUUAAUAAUGAGCUGUGCAUUAAAGUUAUAUGG___UAUGAUUUAAUGUACUAUUAGAGGCU________UAACUAAGGUCAUUAAGCA
......((((((((........((((((((.(((((((......))))))))))))))).......((((...............)))))))))))) (-12.17 = -12.86 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:48 2006