Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,678,386 – 15,678,478 |
Length | 92 |
Max. P | 0.998752 |
Location | 15,678,386 – 15,678,478 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.74 |
Mean single sequence MFE | -35.68 |
Consensus MFE | -27.16 |
Energy contribution | -27.18 |
Covariance contribution | 0.02 |
Combinations/Pair | 1.12 |
Mean z-score | -3.24 |
Structure conservation index | 0.76 |
SVM decision value | 3.21 |
SVM RNA-class probability | 0.998752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15678386 92 + 20766785 ACGCCUCGUCCGUUGUCCGUUGUCCGU-------UGCCCGCUGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA ......((..((........))..)).-------(((((((((((((((((.(..(((((((........)))))))..))))))..)))))))))))) ( -37.50) >DroSec_CAF1 555536 71 + 1 ACGCCUCGUCCGUUGUC----------------------------CGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA .......((((((((((----------------------------((((((.(..(((((((........)))))))..))))))..))))))))))). ( -31.60) >DroSim_CAF1 456144 71 + 1 ACGCCUCGUCCGUUGUC----------------------------CGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA .......((((((((((----------------------------((((((.(..(((((((........)))))))..))))))..))))))))))). ( -31.60) >DroEre_CAF1 458230 85 + 1 ACGGCUCGUCCGCUGUCCGUUGUCCGU--------------UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAGCUCGAAGCUUGGACAGCGGGCA (((((......)))))....(((((((--------------((((((((((.(..(((((((........)))))))..))))))..)))))))))))) ( -35.80) >DroYak_CAF1 475906 99 + 1 AUGGCUCGUCCGUUGUCCGUUGUCCGUUCCCAGUUGUCCGCUGUCCGUUUCGGUUUUUCAUGGCUUGAGACGUGAAAGUCGAAGCUUGGACAGCGGGCA .(((..((..((........))..))...)))..((((((((((((((((((..(((.((((........)))))))..))))))..)))))))))))) ( -41.90) >consensus ACGCCUCGUCCGUUGUCCGUUGUCCGU______________UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA .......((((((((((((.....).....................(((((.(..(((((((........)))))))..))))))..))))))))))). (-27.16 = -27.18 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:47 2006