Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,672,530 – 15,672,621 |
Length | 91 |
Max. P | 0.907464 |
Location | 15,672,530 – 15,672,621 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 99.45 |
Mean single sequence MFE | -28.25 |
Consensus MFE | -27.00 |
Energy contribution | -27.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.28 |
Structure conservation index | 0.96 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15672530 91 + 20766785 AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG .(((((((((((.......((....)).........(((((......))))).....)).))))))).))..((((..........)))). ( -28.00) >DroSec_CAF1 549726 91 + 1 AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGGCCAUGCCGAUAACAACGGGCAG .((......(((....)))((....))......)).((..((((((.(((((.....))))).)))))).....(((.......))))).. ( -29.00) >DroSim_CAF1 450397 91 + 1 AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG .(((((((((((.......((....)).........(((((......))))).....)).))))))).))..((((..........)))). ( -28.00) >DroYak_CAF1 469828 91 + 1 AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG .(((((((((((.......((....)).........(((((......))))).....)).))))))).))..((((..........)))). ( -28.00) >consensus AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG .(((((((((((.......((....)).........(((((......))))).....)).)))))))..)).((((..........)))). (-27.00 = -27.00 + 0.00)
Location | 15,672,530 – 15,672,621 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 99.45 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -30.08 |
Energy contribution | -30.32 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.97 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15672530 91 - 20766785 CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU ..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... ( -32.00) >DroSec_CAF1 549726 91 - 1 CUGCCCGUUGUUAUCGGCAUGGCCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU ((((.(((.((.(((((((..((((.((.(((((.....))))).)).))))))))))).....))..)))..)))).............. ( -28.30) >DroSim_CAF1 450397 91 - 1 CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU ..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... ( -32.00) >DroYak_CAF1 469828 91 - 1 CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU ..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... ( -32.00) >consensus CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU ..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... (-30.08 = -30.32 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:45 2006