| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,671,762 – 15,671,859 |
| Length | 97 |
| Max. P | 0.687813 |
| Location | 15,671,762 – 15,671,859 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.29 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -16.66 |
| Energy contribution | -17.22 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15671762 97 + 20766785 ------GAACACACAUGAACA-UUG---UUAGGGUCUAACUCAGUUAUCAAGUUGUCAAGCGGGCCUAAAGCAACUGCCAUUAUUGGCAUAUGUUGUUUGCGCCGC-A------ ------((.((.((.(((((.-..(---((((...)))))...))..))).))))))..((((((...((((((((((((....)))))...))))))))).))))-.------ ( -27.30) >DroSec_CAF1 548953 91 + 1 ------------ACAUGAACA-UUG---GUAGGGUCUAACACAGUUAUCAAGUUGUCAAGCGGGCCUAAAGCAACUGCCAUUAAUGGCAUAUGUUGUUUGCGCCGC-A------ ------------...(((...-(((---((((.((.....))..)))))))....))).((((((...((((((((((((....)))))...))))))))).))))-.------ ( -27.40) >DroEre_CAF1 451788 104 + 1 ------AAACACACAUGUACUUUUG---GCAGGGUCUAACACAGUUAUCAAGUUGUCAAGCGGGCCUAAAGCAACUGCCAUUAUUGGCAUAUGUUGUUUGCGCCGC-AGUCCGC ------..........(.(((.(((---((((..(.((((...))))..)..)))))))((((((...((((((((((((....)))))...))))))))).))))-))).).. ( -27.00) >DroWil_CAF1 863284 90 + 1 ----------GUAAAGGGAGAAUGG---GGGUGGACUAAAACAGUUAUCAAGUUGUCAAGGUGGCCUAAAGCAACUGCCAUUAUUGGCAUAUGUUGUUUUGGG----------- ----------.......((.(((..---((...((((.....)))).))..))).)).......((((((((((((((((....)))))...)))))))))))----------- ( -26.10) >DroYak_CAF1 469043 98 + 1 ------AUACGUAUAUGUACUUUUG---GUAGGGUCUAACACAGUUAUCAAGUUGUCAAGCGGGCCUAAAGCAACUGCCAUUAUUGGCAUAUGUUGUUUGCGCCGC-A------ ------.........((.((.((((---((((.((.....))..))))))))..)))).((((((...((((((((((((....)))))...))))))))).))))-.------ ( -27.10) >DroAna_CAF1 438485 107 + 1 ACAUCGUAAUACAUAUGCGAU-UCGGUGUAGAGGUCUAACACAGUUAUCAAGUUGUCAAGAGGGCCUAAAGCAACUGCCAUUAUUGGCAUAUGUUGUUUGUGCUGUGA------ ..((((((.......))))))-.(((..(..((((((...((((........)))).....)))))).((((((((((((....)))))...))))))))..)))...------ ( -26.70) >consensus _______AACACACAUGAACA_UUG___GUAGGGUCUAACACAGUUAUCAAGUUGUCAAGCGGGCCUAAAGCAACUGCCAUUAUUGGCAUAUGUUGUUUGCGCCGC_A______ ...............................((((((...((((........)))).....)))))).((((((((((((....)))))...)))))))............... (-16.66 = -17.22 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:43 2006