Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,670,212 – 15,670,314 |
Length | 102 |
Max. P | 0.915258 |
Location | 15,670,212 – 15,670,314 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 78.96 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -14.33 |
Energy contribution | -16.65 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.20 |
Mean z-score | -2.34 |
Structure conservation index | 0.47 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15670212 102 - 20766785 UCUACGGAGAUCAGACCCAAAGCCUUCG---GACUUCAGACUUCAGUCUUUAGUCUUGGGUCUCAAUUUCAGUCUCUCCACUCG-----AUUCUCGUUUGUGGCGAGUCU ......(((((.(((((((........(---((((..((((....))))..))))))))))))..)))))((.(((.((((.((-----.....))...)))).))).)) ( -35.10) >DroSec_CAF1 547479 92 - 1 UCUACGGAGAUCAGACCUAAAGCCUUCC---GACUUCAGACUUCAGUCUUCAGUCUUGGGUCUCAAU----------CCACUCG-----AUUCUCGGUUGUGGCGAGUCU .....(((....((((((((........---((((..((((....))))..))))))))))))...)----------))(((((-----...(......)...))))).. ( -25.60) >DroSim_CAF1 448117 102 - 1 UCUACGGAGAUCAGACCCAAAGCCUUGG---GACUUCAGACUUCAGUCUUCAGUCUUGGGUCUCAAUUUCAGUCUCUCCACUCG-----AUUCUCGGUUGUGGCGAGUCU ......(((((.((((((((..(....)---((((..((((....))))..))))))))))))..)))))((.(((.(((((((-----.....)))..)))).))).)) ( -34.00) >DroEre_CAF1 450326 104 - 1 UCUACGGCGAUCAGGCCCCAUGCCUCCCCAAGUCUUCAGACUUCGGUC-UCAGACUUGAGUCUCAAUUUCAGUCUCCCCACUCG-----AUUCUCGGUUGUGGCGAGUCU .....(((....((((.....))))...(((((((..((((....)))-).))))))).)))........((.(((.(((((((-----.....)))..)))).))).)) ( -33.70) >DroYak_CAF1 467550 98 - 1 UCUACGUAGAUCAGAGCC--------CCAAAGCCUUUAGAC---GACU-UCAGUCUUGGGUCUCAAUUUCAGUCGCUUCACUCGAUUCGAUUCUCGGUUGUGGCGAGUCU .......((((..(((.(--------(((........((((---....-...)))))))).)))........(((((.((..(((........)))..)).))))))))) ( -24.10) >consensus UCUACGGAGAUCAGACCCAAAGCCUUCC___GACUUCAGACUUCAGUCUUCAGUCUUGGGUCUCAAUUUCAGUCUCUCCACUCG_____AUUCUCGGUUGUGGCGAGUCU ............((((((((...........((((..((((....))))..)))))))))))).......((.(((.((((..................)))).))).)) (-14.33 = -16.65 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:42 2006