| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,682,655 – 2,682,755 |
| Length | 100 |
| Max. P | 0.515801 |
| Location | 2,682,655 – 2,682,755 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.95 |
| Mean single sequence MFE | -29.53 |
| Consensus MFE | -22.84 |
| Energy contribution | -23.53 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.515801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2682655 100 + 20766785 AGCUCAGCUGCUCGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGAAUUCUCCAGUGCAGCAACAAUAGCAGCAACAACAGCCGGCAGCCAAAC ......(((((.((((.(((.((((........)))).)))....((((......))))..(((.((.......)).)))......)))))))))..... ( -32.30) >DroPse_CAF1 129308 83 + 1 -GCUCUGCUGCGUGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGCAUUCUCCACAG----------------AACAACAGCCGAGAGCCAAAC -((((((((((((..((((.((.......))))))...))))...((((......))))....----------------......)))..)))))..... ( -24.40) >DroSec_CAF1 115315 100 + 1 AGCUCAGCUGCUCGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGAAUUCUCCAAUGCAGCGACAAUAGCAGCAACAACAGCCGGCAGCCAAAC ......(((((.((((.(((.((((........)))).)))....((((......))))..(((.((.......)).)))......)))))))))..... ( -33.10) >DroEre_CAF1 114296 100 + 1 CGCUCAGCUGCUCGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGAAUACUCCAGUGCAGCUACAACAGCAGCAACAACAGCCGGCAGGCAAAC .((....((((.((((.(((.((((........)))).)))....(((((....)))))..(((.(((.....))).)))......)))))))))).... ( -31.60) >DroYak_CAF1 111457 100 + 1 CGCUCAGCUGUUCGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGAAUACUACAGUGCAGCUACAAUAGCAGCAACAACAGCCGGCAGCCAAAC ......(((((.((((..(((((((.....((.(((......))).)).))))))).....(((.((((...)))).)))......)))))))))..... ( -31.40) >DroPer_CAF1 135459 83 + 1 -GCUCUGCUGCGUGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGCAUUCUCCACAG----------------AACAACAGCCGAGAGCCAAAC -((((((((((((..((((.((.......))))))...))))...((((......))))....----------------......)))..)))))..... ( -24.40) >consensus _GCUCAGCUGCUCGGCACGUGUUCAAAUUACCGUGAAGACGCUUAGGGGUGAAUUCUCCAGUGCAGC_ACAAUAGCAGCAACAACAGCCGGCAGCCAAAC ......(((((.((((.(((.((((........)))).)))....((((......))))...........................)))))))))..... (-22.84 = -23.53 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:30 2006