Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,661,151 – 15,661,271 |
Length | 120 |
Max. P | 0.587898 |
Location | 15,661,151 – 15,661,271 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -22.85 |
Energy contribution | -21.93 |
Covariance contribution | -0.91 |
Combinations/Pair | 1.50 |
Mean z-score | -1.33 |
Structure conservation index | 0.68 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15661151 120 - 20766785 AUUUAGUCAAAUGCACUUCGCCACUGGUCUCCUCCGAUUCUGUAGCCGAAAUUACUUCGUUCACCUCCUCCUCGGUGGGAACACAGCCCAGGAGUCUCAGCACAGUGCCCACUUCUCUAA ..((((......(((((..((....((.(((((......((((....(((.....)))((((.((.((.....)).))))))))))...))))).))..))..)))))........)))) ( -28.24) >DroVir_CAF1 640605 120 - 1 AUUUGGUCAAAUGCACCACGCCGCUUGUCUCCUCUGUUUCGGUGGCUGAUAUUACCUCAUUGACCUCCUCUUCGGUGGGUACACAGCCCAACAAUCUGAGAACUGUGCCCACCUCACGCA ....((((((.........((((((...(......)....))))))(((.......)))))))))........((((((((((...(.((......)).)...))))))))))....... ( -34.10) >DroGri_CAF1 565336 120 - 1 AUUUGGUUAGAUGCACCACGCCGCUUGUCUCCUCCGUUUCGGUGGCCGAGAUGACCUCGUUGACCUCCUGCUCGGUGGGCACACAGCCCAACAGCCUCAAAACUGUGCCCACCUCACGCA ....((((((.........((((((...(......)....))))))((((.....))))))))))....((..((((((((((....................))))))))))....)). ( -35.35) >DroWil_CAF1 843015 120 - 1 AUUUUGUGAGAUGAACUUCACCACUGGUUUCCUCUGAUUCUGUGGCCGAGAUGACCUCAUUCACUUCCUGCUCAGUGGGCACACAACCCAAGAGUCUCAAUACGGUUCCCACUUCUCGGA ......(((((.(((((..(((...)))...((((.....((((((((((.....)))...((((........))))))).)))).....)))).........))))).....))))).. ( -26.50) >DroMoj_CAF1 712209 120 - 1 AUUUGGUCAAAUGCACCACGCCGCUCGUCUCCUCCGUUUCGGUUGCCGAGAUUACCUCGUUGACCUCCUGUUCGGUGGGCACGCAGCCCAACAAUCUCAGCACUGUGCCCACCUCUCGCA ....((((((..(((....((((..((.......))...)))))))((((.....))))))))))........((((((((((..((............))..))))))))))....... ( -37.70) >DroAna_CAF1 428581 120 - 1 ACUUUGUCAAGUGGACUUCGCCACUGGUCUCCUCCGAUUCCGUGGCCGAAAUCACUUCAUUAACCUCCUGUUCGGUGGGAACGCAGCCCAGUAGUCUGAGGACAGUUCCCACUUCACGAA ......((((((((..((((((((.((..((....))..)))))).)))).))))))............((..(((((((((....(((((....))).))...)))))))))..)))). ( -39.00) >consensus AUUUGGUCAAAUGCACCACGCCACUGGUCUCCUCCGAUUCGGUGGCCGAGAUUACCUCAUUGACCUCCUGCUCGGUGGGCACACAGCCCAACAGUCUCAGAACUGUGCCCACCUCACGCA .....(((((.........(((((.((............))))))).(((.....))).))))).........(((((((((......................)))))))))....... (-22.85 = -21.93 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006