Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,660,110 – 15,660,202 |
Length | 92 |
Max. P | 0.741830 |
Location | 15,660,110 – 15,660,202 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 82.70 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -17.95 |
Energy contribution | -19.48 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.13 |
Mean z-score | -2.58 |
Structure conservation index | 0.63 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15660110 92 - 20766785 CCUGGCUUUGGAUCUCCACUUGGCCCUCUGCC-----UGGGCCCGGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA ..(((.((((((.(..((...(((((......-----.)))))(((((....)))...(((((.....))))))).....))..).)))))).))). ( -29.30) >DroGri_CAF1 564071 87 - 1 GCUGGUUUAGG---UCUGCUAGGCCAGC--UU-----UUGGCCAUGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA ((((((((((.---....))))))))))--.(-----((((..(((((....))))).(((((.....)))))..............)))))..... ( -28.60) >DroSec_CAF1 537299 92 - 1 CCUGGCUUUGGAUCUCCACUUGGCCCUCUGCC-----UGGGCGCGGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA ..(((.((((((.(..((..((((((......-----.))))((((((....)))...(((((.....))))))))))..))..).)))))).))). ( -30.30) >DroEre_CAF1 440158 85 - 1 CCUGGCUCUGGAUCUCCACUUGGCCCUCUGCC------------GGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA ..(((.((((((.(..((..((((........------------.(((....)))...(((((.....))))).))))..))..).)))))).))). ( -27.20) >DroYak_CAF1 456665 92 - 1 CCUGGCUCUGGAUCUGCACUUGGGCCUCUGCC-----UGGACCUGGACUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA ..(((.((((((...(((...((((....)))-----).(((.(((.(....))))..(((((.....))))).)))...)))...)))))).))). ( -29.00) >DroAna_CAF1 427683 96 - 1 -CCGGUUCGGGCCCUCAAUCUGGUCCUAUACCCUGGUCGGACCCUGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA -..(((..(((((........)))))...)))((((.(((....((((....))))..(((((.....))))).........)))..))))...... ( -26.80) >consensus CCUGGCUCUGGAUCUCCACUUGGCCCUCUGCC_____UGGGCCCGGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA ..(((.((((((.........(((((............)))))..(((....)))(..(((((.....)))))..)..........)))))).))). (-17.95 = -19.48 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:35 2006