Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,625,842 – 15,625,940 |
Length | 98 |
Max. P | 0.936262 |
Location | 15,625,842 – 15,625,940 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.05 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -21.54 |
Energy contribution | -22.26 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.14 |
Mean z-score | -2.48 |
Structure conservation index | 0.74 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15625842 98 - 20766785 GGAAUAAUUCCGUGGGGUUAGGAUGGGUUAUCAGCUAUCACUGAUAGUUCGACUUGCCUCAAGUGGGAAUUAUUUCAAAAUUAACUGAGGGCAUUAAA (((((((((((.((((((.(((.((..(((((((......)))))))..)).)))))))))....)))))))))))...................... ( -33.60) >DroSec_CAF1 416429 97 - 1 GGAAUAAUUCCGAGGGGUUAGGAUGGGUUAUC-GCUAUCACUGAUUCUUCGACUUGCCUUAAGUGAGAAUUAUUUCAAAAUUAGCUGAGCGCAUUAAA ((((((((((((((((((((((((((......-.))))).)))))))))))(((((...)))))..)))))))))).......((.....))...... ( -29.50) >DroSim_CAF1 399468 97 - 1 GGAAUAAUUCCGAGGGGUUAGGAUGGGUUAUC-GCUAUCACUGAUUCUUCGACUUGCCUUAAGUGGGAAUUAUUUCAAAAUUAGCUGAGGGCAUUAAA ((((((((((((((((((((((((((......-.))))).)))))))))).(((((...))))).))))))))))).......((.....))...... ( -32.10) >DroEre_CAF1 404330 97 - 1 GGAAUAGUUCCGAGGGGUUAAGAUGGGUUAUC-GCUAUCACUGAUUCUUCGAUCUGCUCUAAGUGGUAAUUAUUUCAGAAUUAGUUGAGCGCAUGAGA (((.(((...((((((((((.(((((......-.)))))..))))))))))..))).)))..(((.((((((.........))))))..)))...... ( -20.90) >DroYak_CAF1 421235 98 - 1 GGAAUAAUUUCGAGGGGUUAAGCUGGGUUAUCAGCUAUCACUGAUUCUUCGAUCGGCUCUAAGUGGGAAUUAUUUCAAAAUUAGCUGAGGGCAUCAGA ((((((((((((((((((((((((((....)))))).....)))))))))))((.((.....)).)))))))))))........((((.....)))). ( -28.60) >consensus GGAAUAAUUCCGAGGGGUUAGGAUGGGUUAUC_GCUAUCACUGAUUCUUCGACUUGCCUUAAGUGGGAAUUAUUUCAAAAUUAGCUGAGGGCAUUAAA ((((((((((((((((((((((((((........))))).)))))))))))..(..(.....)..)))))))))))...................... (-21.54 = -22.26 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:29 2006