Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,677,548 – 2,677,656 |
Length | 108 |
Max. P | 0.919176 |
Location | 2,677,548 – 2,677,656 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 75.02 |
Mean single sequence MFE | -30.72 |
Consensus MFE | -18.58 |
Energy contribution | -22.20 |
Covariance contribution | 3.62 |
Combinations/Pair | 1.16 |
Mean z-score | -1.80 |
Structure conservation index | 0.61 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2677548 108 - 20766785 UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCAACUUGCAAC-------GAGCGACUUGCAACGGCGACUCUUGACUCUCGAAUCCC ...((((((........))))))(((((..(((....((.....))...((((...((((((.((((...-------..)))).)))))).))))........)))..))))).. ( -32.90) >DroSec_CAF1 110271 94 - 1 UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCAAC---------------------UUGCAACGGCGACUCUUGACUCUCGAAUCCC ...((((((........))))))(((((..(((....((.....))...((((...((((...---------------------..)))).))))........)))..))))).. ( -25.80) >DroSim_CAF1 108494 94 - 1 UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCGAC---------------------UUGCAACGGCGACUCUUGACUCUCGAAUCCC ...((((((........))))))((.((..(((((((((((...((((........))))...---------------------))))..))).).)))..)).))......... ( -25.20) >DroEre_CAF1 109484 108 - 1 UUUGGGUGCCAUUCGCUGCACUCGAUUCUUGAGCCAGGCGACUUGCAACUGCCAGCUUGC-------AACUAGCGACUUGCAACUCGCAAUGGCCACUCUCGACUCUCGAAUCUC ...((((((........))))))(((((.((.((((.((((.((((((.(((.((.....-------..)).)))..)))))).))))..)))))).....(.....)))))).. ( -33.20) >DroYak_CAF1 106509 114 - 1 UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCA-GCGACUUGCAACUGCCAACUUGCAACUUGCAACUAGAGACUUGCAGCUUGCAGCUUGCGAUGGCGACUCUUGAAUCUC ...((((((........))))))(((((..(((...-((.(.((((((((((.((.(((((((((.......)))..)))))).)))))).))))))).))..)))..))))).. ( -38.60) >DroAna_CAF1 112258 85 - 1 CUUGGGUGCCAUUCCCUGCACCCGAUUCUCGAGUCUGGCUACUAGCAACUUGCAACUUGCGAC---------------------UUG------CGACUCUUGACUCCGG---CUC .((((((((........))))))))..((.(((((.((......((((.((((.....)))).---------------------)))------)....)).))))).))---... ( -28.60) >consensus UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCAAC_____________________UUGCAACGGCGACUCUUGACUCUCGAAUCCC ...((((((........))))))(((((..(((....((.....))....(((...((((((.((((((........)))))).)))))).))).........)))..))))).. (-18.58 = -22.20 + 3.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006