Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,604,751 – 15,604,864 |
Length | 113 |
Max. P | 0.607838 |
Location | 15,604,751 – 15,604,864 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -21.34 |
Energy contribution | -21.74 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.79 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15604751 113 + 20766785 AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUACCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUGAACUG-------UGUGGCAGGUACUUGUUUUG .(((((((....)))))))((((((((.........(((((...(((..((((((....(((((......)))))..))))))((.....)).-------)))..))))))))))))).. ( -27.80) >DroSec_CAF1 395585 107 + 1 AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUAGCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAA------ACUG-------UGUGGCAGGUACUUGUUUUG .(((((((....)))))))((((((((.....((.(.((((...(((..((((((....(((((......)))))..))))))------..))-------).))))).)))))))))).. ( -25.10) >DroSim_CAF1 377471 113 + 1 AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUAGCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUGAACUG-------UGUGGCAGGUACUUGUUUUG .(((((((....)))))))((((((((......(((.((......(((.((((((....(((((......)))))..))))))..))).....-------.)).)))...)))))))).. ( -25.60) >DroEre_CAF1 383024 113 + 1 AGCUAAUACAGUUAUUAGCAAACACGUUUAUUAUGUGGCUAACAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUUAGCUG-------UGUGGCAGGUACUUGUUUUC .(((((((....)))))))...(((((.....)))))((((((((((((((((((....(((((......)))))..)))))..)))).))))-------).)))).............. ( -29.50) >DroYak_CAF1 399564 120 + 1 AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUGGCUAAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAACGUUGAACUGUGUUGUGUGUGGCAGGUACUUGUUUUC .(((((((....)))))))((((((((......(((.((.....((((........((..(..(((((..((....))...)))))..)...)).))))..)).)))...)))))))).. ( -27.50) >consensus AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUAGCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUGAACUG_______UGUGGCAGGUACUUGUUUUG .(((((((....)))))))((((((((......(((.((.....))...((((((....(((((......)))))..)))))).....................)))...)))))))).. (-21.34 = -21.74 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:26 2006