Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,599,845 – 15,599,940 |
Length | 95 |
Max. P | 0.596461 |
Location | 15,599,845 – 15,599,940 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 75.82 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -13.11 |
Energy contribution | -13.00 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.20 |
Mean z-score | -1.86 |
Structure conservation index | 0.47 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15599845 95 + 20766785 GAAACAGUUCACCGGCUUCCA-UUGGCAAAAGGCGAUG--GAUG---AUGAGUG-AACGGCC---GGGGGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA ...((..(((.((((((((((-(((.(....).)))))--))..---....(..-..)))))---)).....(((..((((....))))..)))..)))..)).. ( -32.20) >DroPse_CAF1 441070 95 + 1 GAAACACUUGGCUGGCUUCGA-UGGGGCGAUGGCGAUGGGGA---------UGGCGAUGGCAAAGUGGUGGAGCUGACAACGCAAUUUGCAGGCGAGAAAGGUGA ....(((((..((.(((((((-....((.((.((.((....)---------).)).)).))...(((.((.......)).)))...))).)))).))..))))). ( -27.20) >DroSec_CAF1 390753 98 + 1 GAAACACUUCACCGGCUUCCA-UUGGCAAAAGGCGAUG--GAUGAUGAUGAGUG-AACGGCC---GGGGGAAGCUGACAAAGCAUUUUGCAGGCGAGAAAGGUGA ....((((((.((((((((((-(((.(....).)))))--)).........(..-..)))))---))..)).(((.....))).(((((....)))))..)))). ( -30.00) >DroEre_CAF1 378181 95 + 1 GAAACACUUCACCGGCUUCCA-UUGGCUAAAGGCGAUG--GAUG---AUGAGCG-AACGGCC---GGAGGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA ....(((((..((((((((((-(((.(....).)))))--))..---.......-...))))---)).....(((..((((....))))..))).....))))). ( -31.20) >DroAna_CAF1 366442 80 + 1 GAAACACUUCACCGGCUUCAAGCUGGCUAAAGGCAAAA--AA-----------------------GAGAGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA ........(((((.((((..((....))..))))....--..-----------------------.......(((..((((....))))..)))......))))) ( -18.90) >DroPer_CAF1 400046 101 + 1 GAAACACUUGGCUGGCUUCGA-UGGGGCGAGGGCGAUGGGGAUG---GUGAUGGCGAUGGCAAAGUGGUGGAGCUGACAACGCAAUUUGCAGGCGAGAAAGGUGA ....(((((..((.((((...-....((.(..((.((....)).---))..).))....(((((...(((..........)))..))))))))).))..))))). ( -26.30) >consensus GAAACACUUCACCGGCUUCCA_UUGGCAAAAGGCGAUG__GAUG___AUGAGGG_AACGGCC___GGGGGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA ....(((((..(((((((((.....((.....))..........................((...)).)))))))).....((.....))......)..))))). (-13.11 = -13.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:25 2006