Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,595,144 – 15,595,237 |
Length | 93 |
Max. P | 0.606672 |
Location | 15,595,144 – 15,595,237 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -16.51 |
Consensus MFE | -11.23 |
Energy contribution | -11.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.68 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15595144 93 + 20766785 CACUCGUUGCG---ACUCCG-CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCG-UUGU------UUCUC----C .....(..(((---((...(-(....))...((((.....(((((...((((.......)))).))))).....))))........)-))))------..)..----. ( -18.10) >DroVir_CAF1 543740 87 + 1 CUU---CUA--------CGG---CUUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACUCAUUUG--UUGUUGUUGUUG-UC----G ...---..(--------(((---(..((((((((....(((.((((..((((.......))))...))))..)))....)))))))--).))))).....-..----. ( -19.80) >DroPse_CAF1 435693 91 + 1 CU--CUCUCUC---UCUCUGCCUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCC-CUAC------CUU-C----C ..--.......---..........(((....((((.....(((((...((((.......)))).))))).....)))))))......-....------...-.----. ( -12.70) >DroYak_CAF1 389887 101 + 1 CACUCGUUGCGUUCACGCCG-CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCG-UUGUGUUUC-UCCUC----C (((..((.(((....))).)-)..))).(((((((.....))))))).((((.((((((.((....)).))))))..(((((.....-.)))))...-)))).----. ( -21.30) >DroAna_CAF1 361846 96 + 1 CU--CUUUUCA---ACUCCG-CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCCCUCGA------CUCUAGACAC ..--......(---((.(((-(......(((((((.....))))))).(((((....)))))..)))).))).((((...............------.....)))). ( -14.45) >DroPer_CAF1 394596 91 + 1 CU--CUCUCUC---UCUCUGCCUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCC-CUAC------CUU-C----C ..--.......---..........(((....((((.....(((((...((((.......)))).))))).....)))))))......-....------...-.----. ( -12.70) >consensus CU__CUCUCCC___ACUCCG_CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCC_UUGU______CUCUC____C ........................(((....((((.....(((((...((((.......)))).))))).....)))))))........................... (-11.23 = -11.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:24 2006