| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,578,725 – 15,578,822 |
| Length | 97 |
| Max. P | 0.869357 |
| Location | 15,578,725 – 15,578,822 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -17.69 |
| Energy contribution | -18.05 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15578725 97 + 20766785 AUGACGACGUCAUUGGAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAAC-AGCAGUCAAAAGAAUAAU----GCUGAGC--UGGAAA--AAUGCUAGCCA---- ....((..(((((....((((((.......))))))....))))).....))..(-((((.((....))....)----)))).((--(((...--....)))))..---- ( -25.50) >DroVir_CAF1 518268 95 + 1 -AAACGACGUCAUUGGAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAGG-AACAGUCAAUAGAAUAUUUUCAGCUGAGCAUUAGAAA--AAUA----------- -.......(((((....((((((.......))))))....)))))...(((((((-(....((....))...))))).)))............--....----------- ( -17.80) >DroPse_CAF1 420864 96 + 1 AUGACGACGUCACUGGAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAAC-AGCAGUCAAAGGAAUAAU----GC----C--UGGAA---AAUGGCAAGAAUGGA .((((...(((((....((((((.......))))))....)))))....((....-.)).)))).........(----((----(--.....---...))))........ ( -26.90) >DroEre_CAF1 359777 93 + 1 AUGACGACGUCAUUGGAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAAC-AGCAGUCAAAAGAAUAAU----GCUGAGC--UGGAA---AAUGCUGG------- ........(((((....((((((.......))))))....)))))...(((...(-((((.((....))....)----)))).))--)....---........------- ( -23.00) >DroMoj_CAF1 580349 98 + 1 -UGACUACGUCAUUGAAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAAGCAGCAGUCAAAAGAAUAUUUUUCGCUUAGCAUUAGAAGCGAGUG----------- -(((((..(((((....((((((.......))))))....)))))....((......)))))))...........(((((((........)))))))..----------- ( -27.30) >DroAna_CAF1 347184 95 + 1 AUGACGACGUCAUUGGAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAAC-AGCAGUCAAAAGAAUAAA----GCUG-GC--UAGAA---AAUCGAAAAAA---- ....(((.(((((....((((((.......))))))....)))))...(((...(-(((..((....)).....----))))-))--)....---..)))......---- ( -20.60) >consensus AUGACGACGUCAUUGGAGUGGAAAAAUCACUUCCGCGUAUGUGACCAAAGCGAAC_AGCAGUCAAAAGAAUAAU____GCUGAGC__UAGAA___AAUG__A________ .((((...(((((....((((((.......))))))....)))))....((......)).)))).............................................. (-17.69 = -18.05 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:17 2006